Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA51_RS46300 Genome accession   NZ_CP107764
Coordinates   10377631..10378308 (+) Length   225 a.a.
NCBI ID   WP_330309377.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00589     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10372631..10383308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA51_RS46280 (OHA51_46320) - 10373596..10374063 (-) 468 WP_330309373.1 DUF5990 family protein -
  OHA51_RS46285 (OHA51_46325) - 10374283..10375218 (+) 936 WP_330309374.1 ATP-binding cassette domain-containing protein -
  OHA51_RS46290 (OHA51_46330) - 10375215..10376063 (+) 849 WP_330309375.1 ABC transporter permease -
  OHA51_RS46295 (OHA51_46335) - 10376276..10377634 (+) 1359 WP_330309376.1 sensor histidine kinase -
  OHA51_RS46300 (OHA51_46340) vraR 10377631..10378308 (+) 678 WP_330309377.1 response regulator transcription factor Regulator
  OHA51_RS46305 (OHA51_46345) - 10378348..10378821 (-) 474 WP_330309378.1 carboxymuconolactone decarboxylase family protein -
  OHA51_RS46310 (OHA51_46350) - 10379000..10379527 (+) 528 WP_330309379.1 GNAT family protein -
  OHA51_RS46315 (OHA51_46355) - 10379683..10380579 (-) 897 WP_330309380.1 endo alpha-1,4 polygalactosaminidase -
  OHA51_RS46320 (OHA51_46360) - 10380859..10381770 (+) 912 WP_330309381.1 alpha/beta hydrolase -
  OHA51_RS46325 (OHA51_46365) - 10381775..10382590 (-) 816 WP_330309382.1 phytanoyl-CoA dioxygenase family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24329.82 Da        Isoelectric Point: 5.9550

>NTDB_id=645816 OHA51_RS46300 WP_330309377.1 10377631..10378308(+) (vraR) [Streptomyces sp. NBC_00589]
MTTVLIVDDQPLQRLGFRMLLESTPDTEVVGEAAQGGDAVRKAAELRPDVILMDVRMPGMDGIEATRRVVASGGRSRVLI
LTTFDLDEYAHAALRAGASGFLLKDAHPEELLAGIRAVAAGDAVIAPALTRRLLDTYARHLPHESSSRKAADDPRVRALT
EREYEIFVAIGQGWSNSEIAERLVVAESTVKTHVGRVLAKVGVRDRVQAVILAYDLGLAHPNPPD

Nucleotide


Download         Length: 678 bp        

>NTDB_id=645816 OHA51_RS46300 WP_330309377.1 10377631..10378308(+) (vraR) [Streptomyces sp. NBC_00589]
GTGACCACTGTGCTCATCGTGGACGACCAGCCACTGCAACGCCTCGGCTTCCGGATGCTCCTGGAGAGCACCCCCGACAC
CGAAGTCGTCGGCGAGGCCGCCCAGGGCGGGGACGCCGTCCGCAAGGCCGCCGAACTCCGCCCGGACGTGATCCTCATGG
ACGTACGGATGCCCGGCATGGACGGCATCGAGGCCACCCGCCGCGTCGTCGCCTCCGGCGGCCGCTCCCGCGTTCTCATC
CTGACCACGTTCGACCTGGACGAGTACGCCCACGCGGCACTGCGCGCGGGAGCCAGCGGATTCCTGCTCAAGGACGCCCA
CCCCGAGGAACTCCTGGCCGGTATCCGCGCGGTCGCGGCGGGCGACGCCGTGATCGCCCCCGCGCTGACCCGCCGCCTCC
TCGACACCTACGCCAGGCACCTGCCCCACGAGTCGTCGAGCCGAAAGGCGGCGGACGACCCCCGAGTGCGCGCCCTCACC
GAACGGGAGTACGAGATCTTCGTCGCCATCGGCCAGGGCTGGAGCAACAGTGAGATCGCCGAGCGCCTGGTCGTGGCGGA
ATCCACCGTGAAGACCCACGTCGGCCGCGTCCTGGCGAAGGTGGGAGTCCGCGACCGCGTCCAGGCGGTCATCCTCGCCT
ACGACCTCGGACTCGCCCACCCGAACCCGCCCGACTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-213)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.14

95.556

0.364
  degU Bacillus subtilis subsp. subtilis str. 168

35.683

100

0.36