Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OHA51_RS27245 Genome accession   NZ_CP107764
Coordinates   6061494..6062093 (+) Length   199 a.a.
NCBI ID   WP_086772885.1    Uniprot ID   A0ABY4Z0G0
Organism   Streptomyces sp. NBC_00589     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6056494..6067093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA51_RS27230 (OHA51_27255) - 6056901..6059573 (-) 2673 WP_330306110.1 ABC transporter substrate-binding protein -
  OHA51_RS27235 (OHA51_27260) - 6059933..6060673 (-) 741 WP_330306111.1 SLATT domain-containing protein -
  OHA51_RS27240 (OHA51_27265) - 6061034..6061378 (+) 345 WP_330306112.1 YbaB/EbfC family nucleoid-associated protein -
  OHA51_RS27245 (OHA51_27270) recR 6061494..6062093 (+) 600 WP_086772885.1 recombination mediator RecR Machinery gene
  OHA51_RS27250 (OHA51_27275) - 6062086..6062745 (+) 660 WP_330306113.1 DUF5063 domain-containing protein -
  OHA51_RS27255 (OHA51_27280) - 6062894..6063205 (+) 312 WP_330306114.1 trypco2 family protein -
  OHA51_RS27260 (OHA51_27285) - 6063230..6064561 (+) 1332 WP_330306115.1 trypsin-like serine protease -
  OHA51_RS27265 (OHA51_27290) - 6064613..6065794 (+) 1182 WP_330306116.1 tetratricopeptide repeat protein -
  OHA51_RS27270 (OHA51_27295) - 6065977..6066510 (-) 534 WP_330306117.1 DUF3592 domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21810.27 Da        Isoelectric Point: 4.9908

>NTDB_id=645772 OHA51_RS27245 WP_086772885.1 6061494..6062093(+) (recR) [Streptomyces sp. NBC_00589]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGVVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=645772 OHA51_RS27245 WP_086772885.1 6061494..6062093(+) (recR) [Streptomyces sp. NBC_00589]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGCTCCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGACGGACGTCCGCCGTCTCGCGCAGTGTCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAATGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTGTCGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGGTCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGCCCCGACGACCTGCGGATAAGAGAACTCCTCGCCCGTCTCGCCGACGGCG
TGGTCACCGAGCTGATCCTCGCGACGGACCCGAACCTGGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCTGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457