Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA51_RS27120 Genome accession   NZ_CP107764
Coordinates   6027589..6028272 (+) Length   227 a.a.
NCBI ID   WP_330306090.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00589     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6022589..6033272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA51_RS27105 (OHA51_27130) - 6023495..6025114 (+) 1620 WP_330306087.1 sensor histidine kinase -
  OHA51_RS27110 (OHA51_27135) vraR 6025111..6025791 (+) 681 WP_330306088.1 response regulator transcription factor Regulator
  OHA51_RS27115 (OHA51_27140) - 6026246..6027592 (+) 1347 WP_330306089.1 histidine kinase -
  OHA51_RS27120 (OHA51_27145) vraR 6027589..6028272 (+) 684 WP_330306090.1 response regulator transcription factor Regulator
  OHA51_RS27125 (OHA51_27150) - 6028446..6029666 (+) 1221 WP_330306091.1 cytochrome P450 -
  OHA51_RS27130 (OHA51_27155) - 6029839..6031488 (-) 1650 WP_330306092.1 ABC transporter permease -
  OHA51_RS27135 (OHA51_27160) - 6031485..6032402 (-) 918 WP_330306093.1 ABC transporter ATP-binding protein -
  OHA51_RS27140 (OHA51_27165) - 6032521..6033063 (+) 543 WP_330306094.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24215.89 Da        Isoelectric Point: 4.8483

>NTDB_id=645771 OHA51_RS27120 WP_330306090.1 6027589..6028272(+) (vraR) [Streptomyces sp. NBC_00589]
MTGGTSGTIRVLIADDQVMVREGFSVLLGAMPDIEVVGEAVNGRDAVERVRELAPDVVLMDIRMPEMNGIEATREIVAAD
GAAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLADAPRLSSTAHGA
YGDLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPR

Nucleotide


Download         Length: 684 bp        

>NTDB_id=645771 OHA51_RS27120 WP_330306090.1 6027589..6028272(+) (vraR) [Streptomyces sp. NBC_00589]
ATGACGGGCGGCACCAGCGGCACCATTCGCGTACTGATCGCCGACGACCAGGTGATGGTCCGCGAGGGTTTCTCCGTGCT
GCTCGGCGCGATGCCGGACATCGAGGTGGTCGGCGAGGCGGTGAACGGCCGGGACGCGGTCGAGCGGGTCCGTGAGCTCG
CACCGGACGTCGTGCTGATGGACATCCGGATGCCGGAGATGAACGGGATCGAGGCGACCCGGGAGATCGTCGCCGCGGAC
GGTGCCGCGAAGGTGCTGGTGCTGACCACGTTCGACCTCGACGAGTACGTGTACCAGGCGTTGCGCGCGGGAGCCTCCGG
TTTCCTGCTCAAGGATGCCTCGGCGCGGCAGCTCGCCGATGGGGTGAGGGTGGTGGCAGCCGGGGAGGCGCTGCTCGCTC
CCTCCGTCACCAAGCGGCTGATCACCGAGTTCTCCAAGCTCGCGGACGCGCCCCGGCTCTCGTCCACGGCGCACGGGGCG
TACGGGGATCTGACCGAGCGGGAGACGGAGGTGCTGGTCCTCATCGCCCAGGGCCTGTCGAACGCGGAGATCGCGGGGCG
TCTCGTCGTCGCCGAGTCCACGATCAAGACCCATGTGAGCCGCATCCTGGTGAAGCTGGGCCTGCGGGACCGAACCCAGG
CGGCGGTGTTCGCCTACGAGGCACGGTTGGTCACGCCGCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.24

95.595

0.423
  degU Bacillus subtilis subsp. subtilis str. 168

41.15

99.559

0.41