Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SPB_RS09960 Genome accession   NZ_AEUT02000001
Coordinates   1971551..1972324 (-) Length   257 a.a.
NCBI ID   WP_003102468.1    Uniprot ID   A0A2I8AHA2
Organism   Streptococcus parauberis NCFD 2020     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966551..1977324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS09935 (SPB_2050) ychF 1966684..1967799 (-) 1116 WP_003103347.1 redox-regulated ATPase YchF -
  SPB_RS09940 (SPB_2051) - 1967904..1968272 (-) 369 WP_003103744.1 helix-turn-helix domain-containing protein -
  SPB_RS09945 (SPB_2052) - 1968393..1968590 (-) 198 WP_003104619.1 DUF951 domain-containing protein -
  SPB_RS09950 (SPB_2053) dnaN 1968661..1969797 (-) 1137 WP_003103000.1 DNA polymerase III subunit beta -
  SPB_RS09955 (SPB_2054) dnaA 1969953..1971314 (-) 1362 WP_003103926.1 chromosomal replication initiator protein DnaA -
  SPB_RS09960 (SPB_2055) spo0J 1971551..1972324 (-) 774 WP_003102468.1 ParB/RepB/Spo0J family partition protein Regulator
  SPB_RS09965 (SPB_2056) htrA 1972400..1973608 (-) 1209 WP_003108843.1 S1C family serine protease Regulator
  SPB_RS09970 (SPB_2057) rlmH 1973812..1974291 (+) 480 WP_013794545.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29260.90 Da        Isoelectric Point: 10.2398

>NTDB_id=64572 SPB_RS09960 WP_003102468.1 1971551..1972324(-) (spo0J) [Streptococcus parauberis NCFD 2020]
MTEHLKTIPIADIVANPYQPRLSFDTKELMELAHSIKMNGLIQPIIVRKSDIFGYELIAGERRLRASQLAGLTTIPAVIK
DISNKDSMHQAIVENLQRSNLNPIEEAKAFQNILEKEEMTHDQLAQYMGKSRPYISNSLRLLQLPKSIKEAIEKHHISSG
HARALLAVTSKKEQENYFKQIISQNLSVRQTENLVKKKTNKKLSKIEKDIFNQAIENEIAKSLGLPIQLHKKNDGTGHIK
LTFSNTEELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=64572 SPB_RS09960 WP_003102468.1 1971551..1972324(-) (spo0J) [Streptococcus parauberis NCFD 2020]
ATGACTGAACATTTAAAAACAATTCCAATTGCTGATATTGTAGCTAATCCTTATCAACCTCGTTTAAGTTTTGATACTAA
AGAATTAATGGAATTGGCTCATTCTATTAAAATGAATGGCTTAATACAACCTATTATAGTAAGAAAATCGGATATCTTTG
GTTATGAGTTAATAGCAGGTGAAAGAAGACTGAGAGCTTCACAATTAGCTGGTCTAACTACCATTCCCGCAGTTATCAAA
GATATTTCAAATAAAGATAGTATGCATCAAGCGATTGTTGAAAATTTACAACGGTCTAATTTGAATCCAATTGAAGAAGC
AAAAGCTTTTCAAAATATACTTGAAAAAGAGGAAATGACCCATGATCAACTAGCGCAGTATATGGGCAAATCTCGTCCGT
ATATTAGTAATAGTCTAAGACTGCTACAATTACCAAAATCAATTAAGGAAGCCATTGAAAAACATCACATTTCCTCAGGG
CATGCGCGTGCATTATTAGCTGTAACCAGTAAAAAAGAGCAAGAAAATTATTTTAAACAAATTATTAGTCAGAATTTGAG
TGTTCGACAAACTGAAAATTTAGTAAAAAAGAAAACAAATAAAAAACTAAGTAAAATAGAAAAAGACATTTTTAATCAAG
CTATTGAAAATGAGATAGCAAAAAGCCTTGGTTTACCAATCCAATTACATAAAAAAAACGATGGAACTGGTCACATCAAA
TTAACTTTTTCAAATACTGAAGAATTAAACAGAATTATCAACAAGCTAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I8AHA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

58.203

99.611

0.58

Multiple sequence alignment