Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG974_RS09825 Genome accession   NZ_CP107757
Coordinates   2255557..2256207 (+) Length   216 a.a.
NCBI ID   WP_327282304.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00597     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2250557..2261207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG974_RS09800 (OG974_09795) mug 2251546..2252103 (+) 558 WP_327286025.1 G/U mismatch-specific DNA glycosylase -
  OG974_RS09805 (OG974_09800) - 2252100..2252534 (-) 435 WP_327282300.1 hypothetical protein -
  OG974_RS09810 (OG974_09805) - 2252575..2253324 (-) 750 WP_371646196.1 ABC transporter permease subunit -
  OG974_RS09815 (OG974_09810) - 2253357..2254268 (-) 912 WP_327282302.1 ABC transporter ATP-binding protein -
  OG974_RS09820 (OG974_09815) - 2254377..2255552 (+) 1176 WP_327282303.1 histidine kinase -
  OG974_RS09825 (OG974_09820) vraR 2255557..2256207 (+) 651 WP_327282304.1 response regulator transcription factor Regulator
  OG974_RS09830 (OG974_09825) - 2256309..2257466 (+) 1158 WP_327282305.1 ROK family transcriptional regulator -
  OG974_RS09835 (OG974_09830) - 2257562..2258323 (-) 762 WP_327282306.1 GntR family transcriptional regulator -
  OG974_RS09840 (OG974_09835) - 2258633..2259484 (+) 852 WP_327282307.1 alpha/beta fold hydrolase -
  OG974_RS09845 (OG974_09840) - 2259591..2261186 (+) 1596 WP_371646200.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23282.92 Da        Isoelectric Point: 4.8664

>NTDB_id=645668 OG974_RS09825 WP_327282304.1 2255557..2256207(+) (vraR) [Streptomyces sp. NBC_00597]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIEVVGEAADGASVVPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVDSPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRQARVALERAALTEREEAV
LRLMSRGLTNVEIARELIVGTETVKSHVSAILGKLGARDRTQAVITAYESGFVAPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=645668 OG974_RS09825 WP_327282304.1 2255557..2256207(+) (vraR) [Streptomyces sp. NBC_00597]
ATGCCGGTTACCGTTCTGCTCGTCGATGACGAACCCCTGGTACGCGCGGGCCTGCGTGCCGTTCTGGAGGCCCAGCCCGA
CATCGAAGTGGTGGGTGAGGCGGCCGACGGGGCCTCCGTCGTGCCGCTCGTCCGTCAGCTGAGGCCGGACGTCGTGGCCA
TGGACGTGCGGATGCCGCTGCTCGACGGGATCGAGGCGACGCGGGCCGTCCTGCGGACCGTGGACTCCCCGCCGAAGATC
CTCGTGGTGACCACCTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCCGGTGCGGACGGGTTCCTGCTGAAGCG
GGCCCGCCCCTCCGAGATCGTGCATGCGGTGCGGCTGGTGGCGGAGGGCGAGACGCTGCTGTTCCCGGCAGCCGTGCGGG
CGCTGGCCGCGGAGTACGGGAACCGGCAGGCGCGGGTGGCACTGGAGCGGGCAGCGCTCACCGAGCGGGAGGAGGCGGTG
CTGCGGCTGATGTCGCGAGGGCTGACGAACGTCGAGATCGCCCGCGAGCTGATCGTCGGGACCGAGACGGTGAAGTCCCA
CGTGAGCGCGATTTTGGGCAAGCTGGGGGCGCGGGACCGGACGCAGGCCGTGATCACGGCGTACGAGTCGGGGTTCGTCG
CCCCGGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.654

99.074

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366