Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG888_RS39745 Genome accession   NZ_CP107749
Coordinates   8768688..8769347 (+) Length   219 a.a.
NCBI ID   WP_327660034.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00622     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8763688..8774347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG888_RS39725 (OG888_39735) - 8764670..8765380 (+) 711 WP_327673021.1 spermidine synthase -
  OG888_RS39730 (OG888_39740) - 8765485..8766348 (-) 864 WP_327673022.1 ABC transporter permease subunit -
  OG888_RS39735 (OG888_39745) - 8766345..8767253 (-) 909 WP_327673023.1 ATP-binding cassette domain-containing protein -
  OG888_RS39740 (OG888_39750) - 8767387..8768691 (+) 1305 WP_327673024.1 sensor histidine kinase -
  OG888_RS39745 (OG888_39755) vraR 8768688..8769347 (+) 660 WP_327660034.1 response regulator transcription factor Regulator
  OG888_RS39750 (OG888_39760) - 8769488..8771800 (+) 2313 WP_327673025.1 helix-turn-helix domain-containing protein -
  OG888_RS39755 (OG888_39765) - 8772183..8773202 (+) 1020 WP_327673026.1 helix-turn-helix domain-containing protein -
  OG888_RS39760 (OG888_39770) - 8773316..8774050 (-) 735 WP_327673027.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23466.02 Da        Isoelectric Point: 4.4862

>NTDB_id=645541 OG888_RS39745 WP_327660034.1 8768688..8769347(+) (vraR) [Streptomyces sp. NBC_00622]
MTIRVVLADDQPLVRAALQMVITDTTDVQVVGEAADGAEAVRLTAELTPDVVVMDIRMPGMDGIEATRLITTGPGTARIV
VLTTFDEDDHVYGALRAGASGFLVKDMDLDDILAAVRIVAAGDALIAPSVTRRLIKEFADRPAAAPPRRTELERITQRER
EVLTLVGNGLSNAEIADELSISVATAKTYLTRLLAKLDARDRVQLVILAYEAGLVAPSH

Nucleotide


Download         Length: 660 bp        

>NTDB_id=645541 OG888_RS39745 WP_327660034.1 8768688..8769347(+) (vraR) [Streptomyces sp. NBC_00622]
ATGACCATCCGCGTGGTACTCGCCGACGACCAGCCCCTGGTCCGCGCGGCCCTGCAGATGGTCATCACCGACACCACGGA
CGTCCAGGTCGTGGGCGAGGCCGCTGACGGCGCCGAAGCGGTCCGACTGACAGCGGAACTCACCCCCGACGTAGTGGTGA
TGGACATCCGGATGCCCGGCATGGACGGCATCGAAGCCACCCGCCTGATCACCACGGGCCCCGGCACCGCACGCATTGTT
GTGCTGACGACCTTCGACGAGGACGACCACGTGTATGGAGCGCTGCGCGCCGGCGCATCCGGATTCCTGGTCAAGGACAT
GGACTTGGACGACATCCTCGCCGCAGTCCGTATCGTGGCCGCGGGGGACGCACTCATCGCACCGAGCGTCACCCGCAGAC
TGATAAAGGAGTTCGCGGACCGCCCCGCAGCAGCGCCGCCACGTCGGACAGAGCTCGAGCGCATCACCCAGCGGGAACGC
GAGGTGCTCACCCTGGTCGGCAACGGCCTGTCCAACGCCGAAATCGCCGACGAGCTCTCCATCAGCGTAGCTACCGCCAA
GACCTATCTGACCCGCCTCCTCGCCAAGCTCGACGCACGCGACCGGGTGCAACTCGTGATCCTCGCTTATGAAGCGGGGC
TGGTGGCACCGTCCCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.63

0.37
  degU Bacillus subtilis subsp. subtilis str. 168

35.426

100

0.361