Detailed information NTG0064551

Bioinformatically predicted

Overview

• Name: oppD
• Type: Regulator
• Locus tag: SPB_RS06755
• Genome accession: NZ_AEUT02000001
• Coordinates: 1357198..1358241 (-)
• Length: 347 a.a.
• NCBI ID: WP_003103717.1
• Uniprot ID: A0A0E2UQ99
• Organism: Streptococcus parauberis NCFD 2020
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1352198..1363241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPB_RS06730 (SPB_1390)	rimI	1352897..1353313 (-)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
SPB_RS06735 (SPB_1391)	tsaB	1353318..1354010 (-)	693	WP_302621693.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SPB_RS06740 (SPB_1392)	-	1354283..1354513 (+)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
SPB_RS06745 (SPB_1393)	-	1354515..1356197 (+)	1683	WP_003104437.1	ribonuclease J1	-
SPB_RS06750 (SPB_1394)	amiF	1356263..1357198 (-)	936	WP_003105521.1	ABC transporter ATP-binding protein	Regulator
SPB_RS06755 (SPB_1395)	oppD	1357198..1358241 (-)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
SPB_RS06760 (SPB_1396)	-	1358256..1359287 (-)	1032	WP_003102826.1	ABC transporter permease	-
SPB_RS06765 (SPB_1397)	-	1359297..1360211 (-)	915	WP_003103193.1	ABC transporter permease	-
SPB_RS06770 (SPB_1398)	-	1360287..1361945 (-)	1659	WP_003106046.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 38344.10 Da
• Isoelectric Point: 5.1351

>NTDB_id=64551 SPB_RS06755 WP_003103717.1 1357198..1358241(-) (oppD) [Streptococcus parauberis NCFD 2020]
MTKEKVLSVKDLHVDFKTYAGAVKAIRNINFDLYKGETLAIVGESGSGKSVTTRTLMGLNAKNASITGDIDFKGKKLIEL
NEDEWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHENVSKSEALERALKLMNQVGIPNAEEHINDYPHMWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQNQILKLMKGLQSQISSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEEGSLESIPGTPPDLLNPPKGDAFAARNEYALDIDLEEEPPMFKVSDTHYAATWLL
DERAPQVTPPAPILKRWAKWNKKKGQI

Nucleotide

• Length: 1044 bp

>NTDB_id=64551 SPB_RS06755 WP_003103717.1 1357198..1358241(-) (oppD) [Streptococcus parauberis NCFD 2020]
ATGACTAAAGAAAAAGTATTAAGTGTCAAAGACCTCCATGTTGATTTTAAAACATATGCTGGAGCTGTTAAGGCAATCCG
TAATATCAATTTTGATTTATATAAAGGTGAGACACTAGCCATTGTTGGTGAATCAGGTTCTGGTAAATCCGTTACGACAC
GGACTTTGATGGGGCTAAACGCTAAGAATGCAAGTATCACTGGAGATATTGATTTCAAAGGTAAGAAATTAATTGAGCTT
AATGAAGACGAATGGGTTAAAGTTCGTGGTAAAGAAATTGCCATGATTTTCCAAGATCCCATGACAAGTCTTGACCCTAC
AATGAAAATTGGCATGCAGATTGCAGAAGCGATTCTAATCCATGAAAATGTTTCTAAAAGTGAAGCTTTGGAACGTGCAT
TGAAATTGATGAATCAAGTTGGGATTCCAAATGCGGAAGAACATATCAATGATTATCCACATATGTGGTCTGGTGGTATG
CGTCAACGTGCTGTCATTGCTATTGCACTTGCTGCAAATCCAGAAATTTTAATTGCTGACGAACCTACAACTGCCCTAGA
CGTAACAATTCAGAACCAAATTTTGAAATTGATGAAAGGTTTGCAATCACAAATTTCTTCATCAATTATCTTTATCACCC
ATGACCTTGGGGTTGTGGCTGGTATGGCTGATCGTGTAGCTGTTATGTATGCAGGTAAAATTGTTGAATATGGTACAGTA
GATGAAGTTTTCTATAATCCACAACATCCCTACACATGGGGCCTTTTGAACTCTATGCCTACAACTGATACCGAAGAAGG
AAGCCTTGAATCTATTCCAGGGACACCTCCTGACCTGTTGAATCCTCCAAAAGGAGATGCCTTTGCTGCTCGTAATGAGT
ATGCCTTAGATATCGACTTGGAAGAGGAACCTCCTATGTTTAAAGTTTCTGATACACATTACGCTGCAACATGGTTGTTA
GATGAACGTGCACCACAAGTAACACCACCTGCACCAATTTTAAAACGTTGGGCTAAATGGAATAAGAAGAAAGGACAAAT
TTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (27-183)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (235-297)

3D structure

• AlphaFold DB: A0A0E2UQ99

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
oppD	Streptococcus mutans UA159	77.746	99.712	0.775
amiE	Streptococcus salivarius strain HSISS4	56.083	97.118	0.545
amiE	Streptococcus thermophilus LMG 18311	55.786	97.118	0.542
amiE	Streptococcus thermophilus LMD-9	55.786	97.118	0.542