Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG888_RS16980 Genome accession   NZ_CP107749
Coordinates   3707258..3707935 (+) Length   225 a.a.
NCBI ID   WP_266720021.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00622     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3702258..3712935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG888_RS16960 (OG888_16960) - 3702859..3703500 (+) 642 WP_266720028.1 TetR/AcrR family transcriptional regulator -
  OG888_RS16965 (OG888_16965) - 3703618..3704829 (+) 1212 WP_327670233.1 alpha/beta hydrolase -
  OG888_RS16970 (OG888_16970) - 3704906..3705784 (+) 879 WP_267070584.1 DUF4429 domain-containing protein -
  OG888_RS16975 (OG888_16975) - 3705866..3707242 (+) 1377 WP_327670234.1 sensor histidine kinase -
  OG888_RS16980 (OG888_16980) vraR 3707258..3707935 (+) 678 WP_266720021.1 response regulator transcription factor Regulator
  OG888_RS16985 (OG888_16985) - 3708089..3709219 (+) 1131 WP_327670235.1 alpha/beta hydrolase -
  OG888_RS16990 (OG888_16990) - 3709216..3710445 (+) 1230 WP_327670236.1 acyltransferase -
  OG888_RS16995 (OG888_16995) - 3710487..3711080 (-) 594 WP_327670238.1 aldo/keto reductase -
  OG888_RS17000 (OG888_17000) - 3711086..3711559 (-) 474 WP_327663525.1 MerR family transcriptional regulator -
  OG888_RS17005 (OG888_17005) - 3711672..3712139 (+) 468 WP_327663524.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24234.14 Da        Isoelectric Point: 6.4996

>NTDB_id=645480 OG888_RS16980 WP_266720021.1 3707258..3707935(+) (vraR) [Streptomyces sp. NBC_00622]
MTIRVIIVDDQTMVRAGFAALLNAQSDIDVVGEAPDGKEGVQVSRSTHPDVVLMDVRMPEMDGLAATKELMDPPPGVVHR
PKVLMLTTFDVDDYVYAALRAGASGFLLKDAPPADLISAVRVIAAGEALLAPTVTKRLIADFAKTRPANRKSHDPLLKTL
TPRESEVLELIARGLSNQEIAQKLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLVEPGGR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=645480 OG888_RS16980 WP_266720021.1 3707258..3707935(+) (vraR) [Streptomyces sp. NBC_00622]
ATGACCATTCGCGTGATCATCGTCGACGACCAGACCATGGTGCGGGCGGGTTTCGCCGCGCTGCTGAACGCACAGAGCGA
CATCGACGTCGTGGGAGAGGCCCCGGACGGCAAGGAAGGCGTCCAGGTGAGCCGCTCCACGCATCCCGATGTCGTCCTCA
TGGATGTCCGGATGCCCGAGATGGACGGGCTGGCCGCAACGAAGGAACTGATGGACCCGCCGCCCGGCGTGGTGCACCGG
CCGAAGGTCCTGATGCTCACCACGTTCGACGTCGACGACTATGTGTACGCCGCTCTGCGGGCGGGCGCGTCCGGGTTTCT
GCTCAAGGACGCGCCACCGGCCGATCTGATCTCCGCGGTGCGCGTGATCGCGGCCGGTGAGGCGCTGCTCGCTCCCACGG
TCACCAAGCGTCTCATCGCGGACTTCGCCAAGACCCGCCCCGCAAACCGCAAGAGCCACGATCCGCTGCTGAAGACCCTG
ACACCGCGTGAGTCCGAGGTTCTCGAGCTGATCGCGCGCGGGCTGTCCAATCAGGAGATCGCGCAGAAGCTGGTGCTGGC
CGAGCAGACGGTGAAGACCCATATCGGCCGCGTGCTGGCGAAGTTGGGCCTGCGCGACCGGGCGCAGGCCGTGATCTTCG
CCTATGAATCGGGTCTTGTAGAGCCCGGCGGACGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.694

98.667

0.431
  degU Bacillus subtilis subsp. subtilis str. 168

37.281

100

0.378