Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG888_RS13900 Genome accession   NZ_CP107749
Coordinates   3033645..3034280 (-) Length   211 a.a.
NCBI ID   WP_327664003.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00622     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028645..3039280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG888_RS13880 (OG888_13880) - 3028649..3029017 (-) 369 WP_327664006.1 DUF485 domain-containing protein -
  OG888_RS13885 (OG888_13885) - 3029288..3030844 (+) 1557 WP_327669877.1 S8 family serine peptidase -
  OG888_RS13890 (OG888_13890) - 3030956..3032374 (+) 1419 WP_327669878.1 CoA transferase -
  OG888_RS13895 (OG888_13895) - 3032532..3033551 (+) 1020 WP_371590754.1 CopD family protein -
  OG888_RS13900 (OG888_13900) vraR 3033645..3034280 (-) 636 WP_327664003.1 response regulator transcription factor Regulator
  OG888_RS13905 (OG888_13905) - 3034277..3035578 (-) 1302 WP_327669879.1 sensor histidine kinase -
  OG888_RS13910 (OG888_13910) - 3035814..3036590 (+) 777 WP_327669880.1 class I SAM-dependent methyltransferase -
  OG888_RS13915 (OG888_13915) - 3036608..3037651 (-) 1044 WP_327669881.1 zinc-dependent alcohol dehydrogenase family protein -
  OG888_RS13920 (OG888_13920) - 3037689..3038348 (-) 660 WP_327675422.1 lysoplasmalogenase -
  OG888_RS13925 (OG888_13925) - 3038363..3039247 (-) 885 WP_327669882.1 sterol desaturase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22172.59 Da        Isoelectric Point: 9.8333

>NTDB_id=645473 OG888_RS13900 WP_327664003.1 3033645..3034280(-) (vraR) [Streptomyces sp. NBC_00622]
MSAAVRVLLCDDHAVVRAGLRALLSSTDGMEVVGEADSGERALAMAEALRPDVVLMDLQLGTGMDGVEATRRLTASGAEE
APRVLVLTMFDTDADIARAVAAGATGYLLKAERPDRLFVAIRDAAAGRTALSGAVADRVVSRLRAPGPALTEREREVLAR
LAQGLGNREIARALFLSEATVKTHLGRVYAKLGVRTRAGAVAAAARHRLLP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=645473 OG888_RS13900 WP_327664003.1 3033645..3034280(-) (vraR) [Streptomyces sp. NBC_00622]
GTGAGCGCCGCCGTACGGGTCCTGCTCTGCGACGACCACGCCGTCGTCCGCGCCGGGCTGCGCGCCCTGCTGTCCAGCAC
CGACGGCATGGAGGTGGTCGGCGAGGCGGACAGCGGTGAGCGGGCCCTGGCGATGGCCGAGGCGCTGCGCCCCGACGTGG
TCCTCATGGACCTGCAACTCGGCACCGGCATGGACGGCGTCGAGGCCACCCGCCGGCTGACGGCGTCCGGCGCGGAGGAG
GCCCCGCGCGTGCTGGTGCTCACCATGTTCGACACCGACGCGGACATCGCCCGCGCCGTCGCCGCGGGCGCCACCGGCTA
CCTGCTCAAGGCCGAGCGCCCCGACCGGCTGTTCGTGGCGATCCGCGACGCCGCCGCCGGACGCACCGCCCTGTCGGGTG
CGGTCGCCGACCGGGTGGTGTCCCGGCTCCGCGCCCCCGGGCCCGCGCTGACCGAACGCGAACGTGAGGTGCTGGCCCGC
CTGGCCCAGGGCCTGGGAAACCGGGAGATCGCCCGTGCCCTGTTCCTCAGCGAGGCCACGGTCAAGACCCACCTGGGCCG
CGTCTACGCCAAGCTCGGGGTGCGCACCAGGGCGGGAGCCGTGGCGGCCGCGGCCCGCCACCGACTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.571

99.526

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

34.234

100

0.36