Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   L1A04_RS03220 Genome accession   NZ_CP090879
Coordinates   628727..629296 (-) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 623727..634296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A04_RS03180 (L1A04_03180) - 624201..624809 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  L1A04_RS03185 (L1A04_03185) rplL 624984..625352 (-) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  L1A04_RS03190 (L1A04_03190) rplJ 625395..625895 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  L1A04_RS03195 (L1A04_03195) rplA 626167..626859 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  L1A04_RS03200 (L1A04_03200) rplK 627067..627489 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  L1A04_RS03205 (L1A04_03205) nusG 627670..628218 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  L1A04_RS03210 (L1A04_03210) secE 628231..628413 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  L1A04_RS03215 (L1A04_03215) rpmG 628469..628612 (-) 144 WP_001791441.1 50S ribosomal protein L33 -
  L1A04_RS03220 (L1A04_03220) sigH 628727..629296 (-) 570 WP_000872867.1 sigma-70 family RNA polymerase sigma factor Regulator
  L1A04_RS03225 (L1A04_03225) - 629377..629901 (-) 525 WP_000664740.1 NYN domain-containing protein -
  L1A04_RS03230 (L1A04_03230) rlmB 629901..630647 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  L1A04_RS03235 (L1A04_03235) - 630655..631059 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  L1A04_RS03240 (L1A04_03240) cysS 631052..632452 (-) 1401 WP_000631982.1 cysteine--tRNA ligase -
  L1A04_RS03245 (L1A04_03245) cysE 632436..633083 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=645465 L1A04_RS03220 WP_000872867.1 628727..629296(-) (sigH) [Staphylococcus aureus strain SAUR_BFS2]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=645465 L1A04_RS03220 WP_000872867.1 628727..629296(-) (sigH) [Staphylococcus aureus strain SAUR_BFS2]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979