Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   L1A06_RS12925 Genome accession   NZ_CP090877
Coordinates   2582611..2583057 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2577611..2588057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A06_RS12900 (L1A06_12900) - 2577703..2578326 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  L1A06_RS12905 (L1A06_12905) - 2578621..2580267 (+) 1647 WP_000277718.1 IS1182 family transposase -
  L1A06_RS12910 (L1A06_12910) comGA 2580292..2581266 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  L1A06_RS12915 (L1A06_12915) comGB 2581238..2582308 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  L1A06_RS12920 (L1A06_12920) comGC 2582322..2582633 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  L1A06_RS12925 (L1A06_12925) comGD 2582611..2583057 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  L1A06_RS12930 (L1A06_12930) comGE 2583044..2583343 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  L1A06_RS12935 (L1A06_12935) comGF 2583261..2583758 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  L1A06_RS12940 (L1A06_12940) - 2583855..2584001 (+) 147 WP_001789879.1 hypothetical protein -
  L1A06_RS12945 (L1A06_12945) - 2583991..2584515 (+) 525 WP_001015123.1 shikimate kinase -
  L1A06_RS12950 (L1A06_12950) gcvT 2584674..2585765 (+) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  L1A06_RS12955 (L1A06_12955) gcvPA 2585785..2587131 (+) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=645453 L1A06_RS12925 WP_001788899.1 2582611..2583057(+) (comGD) [Staphylococcus aureus strain SAUR_BFS11]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=645453 L1A06_RS12925 WP_001788899.1 2582611..2583057(+) (comGD) [Staphylococcus aureus strain SAUR_BFS11]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1