Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L1A06_RS12680 Genome accession   NZ_CP090877
Coordinates   2533829..2534515 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS11     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528829..2539515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A06_RS12645 (L1A06_12645) yqeH 2529356..2530456 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  L1A06_RS12650 (L1A06_12650) aroE 2530470..2531276 (+) 807 WP_000666744.1 shikimate dehydrogenase -
  L1A06_RS12655 (L1A06_12655) yhbY 2531280..2531570 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  L1A06_RS12660 (L1A06_12660) nadD 2531573..2532142 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  L1A06_RS12665 (L1A06_12665) yqeK 2532132..2532716 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  L1A06_RS12670 (L1A06_12670) rsfS 2532717..2533070 (+) 354 WP_001088020.1 ribosome silencing factor -
  L1A06_RS12675 (L1A06_12675) - 2533073..2533789 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  L1A06_RS12680 (L1A06_12680) comEA 2533829..2534515 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  L1A06_RS12685 (L1A06_12685) - 2534607..2535068 (+) 462 WP_000439693.1 ComE operon protein 2 -
  L1A06_RS12690 (L1A06_12690) comEC 2535073..2537274 (+) 2202 WP_199172900.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1A06_RS12695 (L1A06_12695) holA 2537331..2538305 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  L1A06_RS12700 (L1A06_12700) rpsT 2538350..2538601 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=645447 L1A06_RS12680 WP_001788928.1 2533829..2534515(+) (comEA) [Staphylococcus aureus strain SAUR_BFS11]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=645447 L1A06_RS12680 WP_001788928.1 2533829..2534515(+) (comEA) [Staphylococcus aureus strain SAUR_BFS11]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969