Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   L0998_RS08585 Genome accession   NZ_CP090876
Coordinates   1722333..1722902 (-) Length   189 a.a.
NCBI ID   WP_054190481.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717333..1727902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS08545 (L0998_08545) - 1717808..1718416 (-) 609 WP_054190480.1 class I SAM-dependent methyltransferase -
  L0998_RS08550 (L0998_08550) rplL 1718591..1718959 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  L0998_RS08555 (L0998_08555) rplJ 1719001..1719501 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  L0998_RS08560 (L0998_08560) rplA 1719773..1720465 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  L0998_RS08565 (L0998_08565) rplK 1720673..1721095 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  L0998_RS08570 (L0998_08570) nusG 1721276..1721824 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  L0998_RS08575 (L0998_08575) secE 1721837..1722019 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  L0998_RS08580 (L0998_08580) rpmG 1722075..1722218 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  L0998_RS08585 (L0998_08585) sigH 1722333..1722902 (-) 570 WP_054190481.1 sigma-70 family RNA polymerase sigma factor Regulator
  L0998_RS08590 (L0998_08590) - 1722983..1723507 (-) 525 WP_000664738.1 NYN domain-containing protein -
  L0998_RS08595 (L0998_08595) rlmB 1723507..1724253 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  L0998_RS08600 (L0998_08600) - 1724261..1724665 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  L0998_RS08605 (L0998_08605) cysS 1724658..1726058 (-) 1401 WP_054190482.1 cysteine--tRNA ligase -
  L0998_RS08610 (L0998_08610) cysE 1726042..1726689 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23085.90 Da        Isoelectric Point: 9.6015

>NTDB_id=645407 L0998_RS08585 WP_054190481.1 1722333..1722902(-) (sigH) [Staphylococcus aureus strain SAUR_BFS12]
MEYDLTTQDSTTKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=645407 L0998_RS08585 WP_054190481.1 1722333..1722902(-) (sigH) [Staphylococcus aureus strain SAUR_BFS12]
TTGGAATATGATTTGACAACTCAAGACAGTACAACCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCAAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

97.884

100

0.979
  sigH Staphylococcus aureus N315

96.825

100

0.968