Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   L0998_RS06705 Genome accession   NZ_CP090876
Coordinates   1333655..1334641 (-) Length   328 a.a.
NCBI ID   WP_054190362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328655..1339641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS06680 (L0998_06680) - 1328915..1329262 (-) 348 WP_054190359.1 hypothetical protein -
  L0998_RS06685 (L0998_06685) - 1329448..1330041 (+) 594 WP_054190360.1 CYTH domain-containing protein -
  L0998_RS06690 (L0998_06690) - 1330145..1330510 (+) 366 WP_000214067.1 truncated hemoglobin YjbI -
  L0998_RS06695 (L0998_06695) yjbH 1330533..1331339 (+) 807 WP_054190361.1 protease adaptor protein YjbH -
  L0998_RS06700 (L0998_06700) pepF 1331799..1333607 (-) 1809 WP_070016683.1 oligoendopeptidase F -
  L0998_RS06705 (L0998_06705) coiA 1333655..1334641 (-) 987 WP_054190362.1 competence protein CoiA Machinery gene
  L0998_RS06710 (L0998_06710) mecA 1334762..1335481 (-) 720 WP_054190363.1 adaptor protein MecA -
  L0998_RS06715 (L0998_06715) spxA 1335852..1336247 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  L0998_RS06720 (L0998_06720) trpS 1336542..1337531 (+) 990 WP_054190364.1 tryptophan--tRNA ligase -
  L0998_RS06725 (L0998_06725) opp4C 1337619..1338500 (-) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  L0998_RS06730 (L0998_06730) opp4B 1338512..1339474 (-) 963 WP_054190365.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.26 Da        Isoelectric Point: 9.3244

>NTDB_id=645402 L0998_RS06705 WP_054190362.1 1333655..1334641(-) (coiA) [Staphylococcus aureus strain SAUR_BFS12]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFDLENKQIYKFHQLQSLGGNKYFAYKTKDCISELFNETPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=645402 L0998_RS06705 WP_054190362.1 1333655..1334641(-) (coiA) [Staphylococcus aureus strain SAUR_BFS12]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAACCCAATCACTCGAAAACTT
CATACGTTTGATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACTGTATTAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924