Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L0998_RS03665 Genome accession   NZ_CP090876
Coordinates   681669..682355 (+) Length   228 a.a.
NCBI ID   WP_077446658.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 676669..687355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS03630 (L0998_03630) yqeH 677196..678296 (+) 1101 WP_054190053.1 ribosome biogenesis GTPase YqeH -
  L0998_RS03635 (L0998_03635) aroE 678310..679116 (+) 807 WP_054190052.1 shikimate dehydrogenase -
  L0998_RS03640 (L0998_03640) yhbY 679120..679410 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  L0998_RS03645 (L0998_03645) nadD 679413..679982 (+) 570 WP_054190051.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  L0998_RS03650 (L0998_03650) yqeK 679972..680556 (+) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  L0998_RS03655 (L0998_03655) rsfS 680557..680910 (+) 354 WP_001088020.1 ribosome silencing factor -
  L0998_RS03660 (L0998_03660) - 680913..681629 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  L0998_RS03665 (L0998_03665) comEA 681669..682355 (+) 687 WP_077446658.1 ComEA family DNA-binding protein Machinery gene
  L0998_RS03670 (L0998_03670) - 682447..682908 (+) 462 WP_000439693.1 ComE operon protein 2 -
  L0998_RS03675 (L0998_03675) comEC 682913..685114 (+) 2202 WP_054190049.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L0998_RS03680 (L0998_03680) holA 685171..686145 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  L0998_RS03685 (L0998_03685) rpsT 686190..686441 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25873.54 Da        Isoelectric Point: 9.3381

>NTDB_id=645387 L0998_RS03665 WP_077446658.1 681669..682355(+) (comEA) [Staphylococcus aureus strain SAUR_BFS12]
MVLLYQFLLRYRDFLIQWKLYIISAVVLIMILIGFIFWRQDDYTSRDFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASESELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=645387 L0998_RS03665 WP_077446658.1 681669..682355(+) (comEA) [Staphylococcus aureus strain SAUR_BFS12]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAGAGATTTTTTAATTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGATATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGAATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

96.916

99.561

0.965
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956