Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN35_RS06040 Genome accession   NZ_CP107748
Coordinates   1234862..1235521 (+) Length   219 a.a.
NCBI ID   WP_328919947.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00623     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1229862..1240521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN35_RS06020 (OHN35_06035) - 1230283..1231062 (-) 780 WP_326633884.1 helix-turn-helix transcriptional regulator -
  OHN35_RS06025 (OHN35_06040) - 1231458..1232705 (-) 1248 WP_326818448.1 amino acid decarboxylase -
  OHN35_RS06030 (OHN35_06045) - 1232924..1233586 (-) 663 WP_326818447.1 response regulator transcription factor -
  OHN35_RS06035 (OHN35_06050) - 1233711..1234865 (+) 1155 WP_328919946.1 histidine kinase -
  OHN35_RS06040 (OHN35_06055) vraR 1234862..1235521 (+) 660 WP_328919947.1 response regulator transcription factor Regulator
  OHN35_RS06045 (OHN35_06060) - 1235568..1235888 (+) 321 WP_326815672.1 nuclear transport factor 2 family protein -
  OHN35_RS06050 (OHN35_06065) - 1236066..1237241 (-) 1176 WP_328919948.1 hypothetical protein -
  OHN35_RS06055 (OHN35_06070) - 1237441..1240308 (-) 2868 WP_406309152.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23636.00 Da        Isoelectric Point: 5.3654

>NTDB_id=645376 OHN35_RS06040 WP_328919947.1 1234862..1235521(+) (vraR) [Streptomyces sp. NBC_00623]
MTIRVLLADDNEITRRGLTWIMDSSPDIEVCGEAVDGEEAVARAGELQPDVVLLDVRMPRLDGIESIGRLLNLPHPPRIL
MLTTFHEDESVRVALRAGAAGFLLKDTPPDDLLRAIRDVHGGHSALGPPVARRLVDGLADRASRTNPEEESRIAALSPRE
HEVLRLLARGLTNTDIASVLGMTEGTVKGHVSSILAKLGADSRVKAARIAYRAGLDDQA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=645376 OHN35_RS06040 WP_328919947.1 1234862..1235521(+) (vraR) [Streptomyces sp. NBC_00623]
ATGACCATCCGTGTCCTGCTCGCCGACGACAACGAGATCACGCGCCGCGGGCTGACCTGGATCATGGACTCCAGCCCCGA
CATCGAAGTGTGCGGCGAAGCCGTCGACGGCGAGGAGGCGGTGGCCCGGGCCGGGGAGCTCCAGCCGGACGTGGTCCTTC
TCGACGTCCGTATGCCGAGGCTCGACGGAATCGAGTCCATCGGACGTCTACTGAACCTCCCCCACCCACCGCGGATCCTC
ATGCTCACAACATTCCACGAGGACGAGTCGGTGCGGGTCGCGCTCCGGGCCGGAGCGGCCGGTTTCCTGCTCAAGGACAC
GCCGCCCGACGACCTTCTGCGCGCCATCCGCGACGTGCACGGCGGTCACTCCGCGCTCGGCCCACCGGTGGCCCGCCGCC
TGGTGGACGGCCTGGCCGACCGCGCCTCGCGGACCAACCCCGAAGAGGAGAGCAGAATCGCCGCGCTCAGCCCGCGTGAG
CACGAGGTGCTCCGGCTGCTCGCACGCGGCCTGACCAATACCGACATCGCCTCCGTGCTCGGCATGACCGAGGGCACGGT
CAAGGGCCACGTCAGCAGCATCCTCGCCAAGCTGGGTGCGGACAGCCGCGTCAAGGCCGCGCGGATCGCCTACCGTGCGG
GTCTCGACGACCAGGCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.889

98.63

0.384
  degU Bacillus subtilis subsp. subtilis str. 168

35.586

100

0.361