Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0998_RS00610 Genome accession   NZ_CP090876
Coordinates   131325..131720 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SAUR_BFS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 126325..136720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0998_RS00585 (L0998_00585) - 127622..128026 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  L0998_RS00590 (L0998_00590) - 128550..128783 (+) 234 WP_000384523.1 DUF1146 family protein -
  L0998_RS00595 (L0998_00595) murA 128894..130159 (+) 1266 WP_234873438.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  L0998_RS00600 (L0998_00600) fabZ 130193..130633 (+) 441 WP_054190450.1 3-hydroxyacyl-ACP dehydratase FabZ -
  L0998_RS00605 (L0998_00605) - 130691..131131 (-) 441 WP_000846746.1 YwpF-like family protein -
  L0998_RS00610 (L0998_00610) ssb 131325..131720 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  L0998_RS00615 (L0998_00615) sceD 132109..132804 (+) 696 WP_054190448.1 lytic transglycosylase SceD -
  L0998_RS00620 (L0998_00620) tenA 133191..133880 (+) 690 WP_054190447.1 thiaminase II -
  L0998_RS00625 (L0998_00625) thiD 133873..134703 (+) 831 WP_054190446.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L0998_RS00630 (L0998_00630) thiM 134687..135478 (+) 792 WP_054190445.1 hydroxyethylthiazole kinase -
  L0998_RS00635 (L0998_00635) thiE 135480..136121 (+) 642 WP_054190444.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=645374 L0998_RS00610 WP_000932694.1 131325..131720(+) (ssb) [Staphylococcus aureus strain SAUR_BFS12]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=645374 L0998_RS00610 WP_000932694.1 131325..131720(+) (ssb) [Staphylococcus aureus strain SAUR_BFS12]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTCGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992