Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   L1A02_RS12955 Genome accession   NZ_CP090873
Coordinates   2617106..2618092 (-) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   A0A7U7EXT8
Organism   Staphylococcus aureus strain SAUR_BFS16     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2612106..2623092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A02_RS12935 (L1A02_12935) yjbH 2612464..2613270 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  L1A02_RS12940 (L1A02_12940) - 2613399..2614718 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  L1A02_RS12950 (L1A02_12950) pepF 2615250..2617058 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  L1A02_RS12955 (L1A02_12955) coiA 2617106..2618092 (-) 987 WP_000959282.1 competence protein CoiA Machinery gene
  L1A02_RS12960 (L1A02_12960) mecA 2618213..2618932 (-) 720 WP_001217728.1 adaptor protein MecA -
  L1A02_RS12965 (L1A02_12965) spxA 2619303..2619698 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  L1A02_RS12970 (L1A02_12970) trpS 2619992..2620981 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  L1A02_RS12975 (L1A02_12975) opp4C 2621023..2621904 (-) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  L1A02_RS12980 (L1A02_12980) opp4B 2621916..2622878 (-) 963 WP_103153606.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=645368 L1A02_RS12955 WP_000959282.1 2617106..2618092(-) (coiA) [Staphylococcus aureus strain SAUR_BFS16]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=645368 L1A02_RS12955 WP_000959282.1 2617106..2618092(-) (coiA) [Staphylococcus aureus strain SAUR_BFS16]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EXT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976