Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN15_RS30010 Genome accession   NZ_CP107746
Coordinates   6757318..6757989 (+) Length   223 a.a.
NCBI ID   WP_327127426.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6752318..6762989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS29995 (OHN15_30055) - 6753843..6754832 (+) 990 WP_406295098.1 alpha/beta hydrolase -
  OHN15_RS30000 (OHN15_30060) - 6754825..6755988 (+) 1164 WP_371795014.1 acyltransferase -
  OHN15_RS30005 (OHN15_30065) - 6756014..6757321 (+) 1308 WP_327127425.1 sensor histidine kinase -
  OHN15_RS30010 (OHN15_30070) vraR 6757318..6757989 (+) 672 WP_327127426.1 response regulator transcription factor Regulator
  OHN15_RS30015 (OHN15_30075) - 6758333..6759790 (-) 1458 WP_406295102.1 catalase -
  OHN15_RS30020 (OHN15_30080) - 6759987..6760886 (-) 900 WP_406295104.1 2-hydroxy-3-oxopropionate reductase -
  OHN15_RS30025 (OHN15_30085) - 6760934..6761773 (-) 840 WP_406295106.1 TIM barrel protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23953.74 Da        Isoelectric Point: 5.1280

>NTDB_id=645353 OHN15_RS30010 WP_327127426.1 6757318..6757989(+) (vraR) [Streptomyces sp. NBC_00624]
MTTIRVLIADDQVMVRQGFTVLLDAEPGIEVVGQAVDGLDAVSKVAELAPDVVLMDVRMPVLGGIEATRRITSPHAAQVK
VLILTTFDLDEYVYEALRAGASGFLLKDASVEELAHAVRVVAAGDALLAPNITKRLIAEFSRMTAAPRAPLRERVGDLTE
RETEVLSLIAQGLSNAEIATRLVVAEQTAKTHVSRILAKLGLRDRTQAAVFAYETGLVRPAGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=645353 OHN15_RS30010 WP_327127426.1 6757318..6757989(+) (vraR) [Streptomyces sp. NBC_00624]
GTGACGACCATCCGCGTGCTGATCGCCGACGACCAGGTGATGGTTCGTCAGGGATTTACGGTGCTGCTCGACGCCGAACC
CGGCATCGAGGTCGTGGGGCAGGCGGTGGACGGCCTCGACGCCGTCTCCAAGGTCGCCGAACTCGCCCCGGACGTCGTCC
TGATGGATGTCCGGATGCCCGTGCTCGGCGGTATCGAGGCGACCCGTCGCATCACGTCACCGCACGCCGCCCAGGTCAAG
GTGCTCATCCTGACCACCTTCGATCTCGACGAGTACGTGTACGAGGCGCTGCGCGCGGGCGCGTCCGGCTTTCTGCTCAA
GGACGCTTCGGTCGAGGAACTGGCCCATGCGGTACGGGTGGTGGCGGCGGGTGACGCGCTGCTCGCCCCGAACATCACCA
AGCGGCTGATCGCCGAGTTCTCCCGGATGACCGCCGCGCCCAGGGCGCCGCTCAGGGAGCGCGTGGGCGATCTGACGGAA
CGCGAGACCGAGGTGCTGTCCCTGATCGCGCAGGGGCTGTCGAACGCGGAGATCGCCACACGCCTGGTGGTGGCCGAGCA
GACGGCGAAGACCCATGTGAGCCGGATCCTGGCCAAGCTGGGGCTGCGCGACCGGACGCAGGCGGCGGTCTTCGCGTACG
AGACGGGCCTCGTCCGCCCGGCCGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.779

97.309

0.426
  degU Bacillus subtilis subsp. subtilis str. 168

40.969

100

0.417