Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN15_RS20915 Genome accession   NZ_CP107746
Coordinates   4703466..4704092 (-) Length   208 a.a.
NCBI ID   WP_030933144.1    Uniprot ID   A0ABV2UIY3
Organism   Streptomyces sp. NBC_00624     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4698466..4709092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS20890 (OHN15_20955) - 4699287..4699760 (+) 474 WP_327126141.1 GNAT family N-acetyltransferase -
  OHN15_RS20895 (OHN15_20960) - 4699778..4700779 (-) 1002 WP_406293762.1 zinc-binding dehydrogenase -
  OHN15_RS20900 (OHN15_20965) - 4700826..4702025 (-) 1200 WP_327126143.1 NAD(P)-binding protein -
  OHN15_RS20905 (OHN15_20970) - 4702126..4702827 (+) 702 WP_406296939.1 pentapeptide repeat-containing protein -
  OHN15_RS20910 (OHN15_20975) - 4702853..4703350 (-) 498 WP_030933146.1 hypothetical protein -
  OHN15_RS20915 (OHN15_20980) vraR 4703466..4704092 (-) 627 WP_030933144.1 response regulator transcription factor Regulator
  OHN15_RS20920 (OHN15_20985) - 4704089..4705417 (-) 1329 WP_406293765.1 sensor histidine kinase -
  OHN15_RS20925 (OHN15_20990) - 4705604..4706161 (+) 558 WP_327126145.1 heme-binding protein -
  OHN15_RS20930 (OHN15_20995) - 4706188..4706790 (+) 603 WP_406293768.1 ankyrin repeat domain-containing protein -
  OHN15_RS20935 (OHN15_21000) - 4706838..4708244 (+) 1407 WP_406293770.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22096.43 Da        Isoelectric Point: 5.1031

>NTDB_id=645329 OHN15_RS20915 WP_030933144.1 4703466..4704092(-) (vraR) [Streptomyces sp. NBC_00624]
MTPPAVRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVVLAARLTPDVVLMDLQLGEGIDGVEATRRIAVTGVH
VLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRSPLPTLTDRERDILGQLSQ
GLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 627 bp        

>NTDB_id=645329 OHN15_RS20915 WP_030933144.1 4703466..4704092(-) (vraR) [Streptomyces sp. NBC_00624]
ATGACCCCGCCCGCCGTACGGATCCTGCTCTGCGACGACCACGCCGTCGTACGTGCCGGACTGCTCGCCCTTCTGGGCAG
CGAACCGGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGTGAGGAGGCCGTCGTCCTGGCCGCCCGGCTGACCCCGGACG
TCGTCCTGATGGACCTCCAACTGGGCGAAGGAATCGACGGAGTCGAAGCCACCCGTCGCATCGCGGTCACCGGTGTCCAT
GTCCTCGTCCTCACGACGTACGACACGGACGCCGACATCACCCGCGCCATCGAGGCGGGCGCCACCGGCTATCTGCTGAA
GGCGGAACGCCCGGAGGAACTCTTCGCCGCGATCCGCTCGGCGGCCCAGGGACGCACCACGCTCTCCCCACCGGTCGCCA
GCCGTGTCATGGCCCGGATGCGCAGCCCCCTGCCGACGCTCACGGACCGCGAACGCGACATCCTGGGCCAGCTGTCCCAG
GGCCTGGGCAACCGGGACATCGCCCGGGCCCTGTTCATCAGCGAGGCCACGGTCAAGACGCACCTGGGCCGCATCTACGA
CAAACTCGGCGTCGACACCCGCGCGGGCGCCGTGTCCGTGGCGAAGGAGCAGCGGTTGCTGCCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.13

99.519

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

35.78

100

0.375