Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHN15_RS12485 Genome accession   NZ_CP107746
Coordinates   2807294..2808358 (-) Length   354 a.a.
NCBI ID   WP_371797325.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2802294..2813358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS12475 (OHN15_12520) rcrP 2803619..2805352 (+) 1734 WP_406292604.1 ABC transporter ATP-binding protein Regulator
  OHN15_RS12480 (OHN15_12525) rcrQ 2805352..2807277 (+) 1926 WP_327124807.1 ABC transporter ATP-binding protein Regulator
  OHN15_RS12485 (OHN15_12530) rpoS 2807294..2808358 (-) 1065 WP_371797325.1 RNA polymerase sigma factor Regulator
  OHN15_RS12490 (OHN15_12535) dnaG 2808646..2810550 (-) 1905 WP_327124809.1 DNA primase -
  OHN15_RS12495 (OHN15_12540) - 2810701..2811960 (-) 1260 WP_030925839.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39853.37 Da        Isoelectric Point: 5.0707

>NTDB_id=645306 OHN15_RS12485 WP_371797325.1 2807294..2808358(-) (rpoS) [Streptomyces sp. NBC_00624]
MHHPEAAVDHLRPEPPEPSEPSEAVVAADAVLEEQAEVPELPEPRGRPDSGGPSSDLFRQYLREIGRIPLLTAADEVELA
RRVEAGLFAEERLARTPDPDSRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK
FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAQLDLTPERVGEVL
RLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGR
IFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=645306 OHN15_RS12485 WP_371797325.1 2807294..2808358(-) (rpoS) [Streptomyces sp. NBC_00624]
ATGCATCATCCGGAGGCAGCGGTGGACCACCTGAGACCCGAACCGCCCGAACCGTCGGAACCGTCCGAGGCCGTCGTCGC
AGCCGACGCCGTCCTGGAGGAGCAGGCGGAGGTGCCCGAACTCCCGGAGCCGCGCGGCCGCCCCGACAGCGGCGGGCCGT
CCTCCGACCTCTTCCGTCAGTACCTGCGGGAGATCGGACGCATCCCGCTGCTCACCGCCGCGGACGAGGTGGAGCTCGCC
CGCCGCGTCGAGGCCGGCCTCTTCGCCGAGGAGCGGCTCGCGAGAACTCCGGACCCGGACTCCCGACTCGCCGTCGATCT
CGACCGGTTGGTGGTCATGGGGCGGATGGCGAAGCGCCGCCTGATCGAGGCGAACCTGCGTCTCGTCGTCTCCGTCGCCA
AGCGCTATGTAGGCCGTGGACTGACCATGCTCGATCTGGTCCAGGAGGGGAACCTCGGACTGATCAGGGCCGTCGAGAAG
TTCGACTACGCCCGGGGCTACAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCCATGTCCCGGGCCCTCGCCGA
CCAGGCGCGGACGATAAGGGTCCCGGTCCATGTCGTCGAGCTGATCAACCGCGTCGTACGGGTCCAGCGCCGGATGCTCC
AGGAACGCGGCTACGAACCGACGCCCGAAGAGGTCGCCGCCCAGCTCGACCTGACGCCGGAACGGGTCGGTGAAGTGCTG
CGACTCGCCCAGGAACCCGTCTCGCTGCACGCGCCGGTCGGCGAGGAGGACGACGTCGCCCTCGGCGACCTGATCGAGGA
CGGAGACGCGGCGTCCCCCGTGGAGTCCGCCGCGTTCCTGCTGCTGCGCGAGCACCTCGAAGCGGTGCTCTCCACCCTGG
GCGAGCGGGAGCGGAAGGTGGTCCAGCTGCGCTACGGGCTGGACGACGGCCGGCCCCGCACACTCGAAGAGATAGGCCGG
ATCTTCGGCGTGACACGCGAACGCATCCGTCAGATCGAATCCAAGACCCTCAACAAGCTGCGGGACCACGCCTTCGCCGA
CCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(289-341)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 3 (Sigma70_r3)

(200-276)

Sigma-70 region 2 (Sigma70_r2)

(121-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.218

83.051

0.367