Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHN15_RS12475 Genome accession   NZ_CP107746
Coordinates   2803619..2805352 (+) Length   577 a.a.
NCBI ID   WP_406292604.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2798619..2810352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS12445 (OHN15_12490) - 2800064..2800264 (-) 201 WP_037822815.1 hypothetical protein -
  OHN15_RS12465 (OHN15_12510) - 2801637..2801942 (+) 306 WP_327129047.1 YtxH domain-containing protein -
  OHN15_RS12470 (OHN15_12515) - 2802003..2803448 (+) 1446 WP_371796270.1 FGGY family carbohydrate kinase -
  OHN15_RS12475 (OHN15_12520) rcrP 2803619..2805352 (+) 1734 WP_406292604.1 ABC transporter ATP-binding protein Regulator
  OHN15_RS12480 (OHN15_12525) rcrQ 2805352..2807277 (+) 1926 WP_327124807.1 ABC transporter ATP-binding protein Regulator
  OHN15_RS12485 (OHN15_12530) rpoS 2807294..2808358 (-) 1065 WP_371797325.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62844.86 Da        Isoelectric Point: 5.3954

>NTDB_id=645304 OHN15_RS12475 WP_406292604.1 2803619..2805352(+) (rcrP) [Streptomyces sp. NBC_00624]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILQYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLALMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPSLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWRALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=645304 OHN15_RS12475 WP_406292604.1 2803619..2805352(+) (rcrP) [Streptomyces sp. NBC_00624]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGCAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCTGCCGCACTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGCGTTCAGTCCTTCTCGGCACGTGAGGTCGG
GCGCTTCGGAGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGATTCCGCGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTATGCGCAGAGCGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGCCGGTGCGGGAGCTGCGCGCTCACGGCCATCTGGAGGTGCGGGCTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGATCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTGCCGCGGCTGTTCGACGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGTCGCTGCTGGCGAGGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCGCGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTGCAACGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
TGCCGCGCTGCGCCGAGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.271

100

0.412