Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN15_RS06180 Genome accession   NZ_CP107746
Coordinates   1415282..1415932 (+) Length   216 a.a.
NCBI ID   WP_030921803.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00624     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1410282..1420932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN15_RS06155 (OHN15_06195) mug 1411130..1411687 (+) 558 WP_406292280.1 G/U mismatch-specific DNA glycosylase -
  OHN15_RS06160 (OHN15_06200) - 1411764..1412201 (-) 438 WP_327123559.1 hypothetical protein -
  OHN15_RS06165 (OHN15_06205) - 1412319..1413056 (-) 738 WP_327123560.1 ABC transporter permease -
  OHN15_RS06170 (OHN15_06210) - 1413059..1413997 (-) 939 WP_406292282.1 ATP-binding cassette domain-containing protein -
  OHN15_RS06175 (OHN15_06215) - 1414105..1415277 (+) 1173 WP_406292284.1 sensor histidine kinase -
  OHN15_RS06180 (OHN15_06220) vraR 1415282..1415932 (+) 651 WP_030921803.1 response regulator transcription factor Regulator
  OHN15_RS06185 (OHN15_06225) - 1416032..1417189 (+) 1158 WP_030921799.1 ROK family transcriptional regulator -
  OHN15_RS06190 (OHN15_06230) - 1417239..1418006 (-) 768 WP_030921797.1 GntR family transcriptional regulator -
  OHN15_RS06195 (OHN15_06235) - 1418271..1419155 (-) 885 WP_406292286.1 RNA polymerase sigma-70 factor -
  OHN15_RS06200 (OHN15_06240) - 1419347..1420177 (+) 831 WP_093777511.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23049.00 Da        Isoelectric Point: 7.3203

>NTDB_id=645295 OHN15_RS06180 WP_030921803.1 1415282..1415932(+) (vraR) [Streptomyces sp. NBC_00624]
MPVTVLLVDDEPLVRAGLRAVLEAQPDIKVVGEAADGAAVIPLVHKLRPDVVAMDVRMPLMDGIEATRVVLRTVPDPPKI
LVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTSKAKAVMKRASLTEREAAV
LRLMARGLSNAEIAAKLVVGVETVKTHVSAVLAKLGARDRTQAVIAAYESGFVAPS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=645295 OHN15_RS06180 WP_030921803.1 1415282..1415932(+) (vraR) [Streptomyces sp. NBC_00624]
ATGCCGGTTACCGTTCTTCTGGTCGACGACGAACCTCTCGTACGCGCGGGGCTGCGCGCGGTCCTTGAGGCTCAGCCCGA
TATCAAGGTGGTGGGCGAGGCGGCCGACGGCGCAGCAGTGATCCCGCTGGTGCACAAGTTGCGCCCCGATGTGGTGGCGA
TGGATGTGCGGATGCCCTTGATGGACGGCATCGAGGCGACCCGGGTGGTGCTGCGCACCGTGCCGGATCCGCCGAAGATC
CTGGTCGTGACGACGTTCGAGAACGATGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCCGACGGCTTCCTGCTCAAGCG
CGCCCGGCCGGCTGAGATCGTGCATGCGGTGCGGCTGGTCGCCGAGGGGGAGTCCTTGCTGTTCCCGGCCGCGGTCCGGC
AGCTCGCCGCCGAGTACGGGACGAGCAAGGCGAAGGCGGTCATGAAGCGGGCATCGCTCACCGAGCGCGAGGCTGCGGTG
CTCCGGTTGATGGCCCGGGGACTGTCGAATGCGGAGATCGCCGCCAAGCTCGTGGTCGGCGTCGAGACGGTGAAGACCCA
TGTCAGCGCGGTGCTGGCCAAGTTGGGGGCCAGGGATCGGACCCAGGCGGTGATCGCCGCGTACGAGTCCGGGTTCGTGG
CTCCGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.935

100

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.375