Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   L0992_RS13255 Genome accession   NZ_CP090854
Coordinates   3048171..3048776 (+) Length   201 a.a.
NCBI ID   WP_048664508.1    Uniprot ID   A0A2N7JXS8
Organism   Vibrio pomeroyi strain YSX02     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3043171..3053776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS13235 (L0992_13235) - 3043413..3044330 (-) 918 WP_372123143.1 ABC transporter ATP-binding protein -
  L0992_RS13240 (L0992_13240) - 3044647..3046278 (-) 1632 WP_239848458.1 SulP family inorganic anion transporter -
  L0992_RS13245 (L0992_13245) can 3046565..3047233 (+) 669 WP_017633236.1 carbonate dehydratase -
  L0992_RS13250 (L0992_13250) hpt 3047303..3047833 (-) 531 WP_017633235.1 hypoxanthine phosphoribosyltransferase -
  L0992_RS13255 (L0992_13255) opaR 3048171..3048776 (+) 606 WP_048664508.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  L0992_RS13260 (L0992_13260) lpdA 3049151..3050581 (-) 1431 WP_017630530.1 dihydrolipoyl dehydrogenase -
  L0992_RS13265 (L0992_13265) aceF 3050823..3052715 (-) 1893 WP_102433045.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23209.44 Da        Isoelectric Point: 6.0748

>NTDB_id=645258 L0992_RS13255 WP_048664508.1 3048171..3048776(+) (opaR) [Vibrio pomeroyi strain YSX02]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=645258 L0992_RS13255 WP_048664508.1 3048171..3048776(+) (opaR) [Vibrio pomeroyi strain YSX02]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
AGTGTTCTCTCGCCGTGGCATTGGCCGTGGTGGACACGCAGACATTGCAGATATTGCTCAGGTATCTGTAGCGACCGTAT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTGAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTGAATGTATGGTTCGAATGGAGCGCATCGACTCGCGATGAAGTATGGCCTCTATTCGTAACCACTAACC
GCACTAACCAAATGTTAGTACAGAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGATGATCACGATCCTAAG
CATCTAGCGAATCTATTCCACGGCATCTGCTACTCGCTATTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGCTACTTAAACATGTTGTGCATCTATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JXS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726