Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SMSK321_RS11085 Genome accession   NZ_AEDT01000034
Coordinates   8833..10602 (+) Length   589 a.a.
NCBI ID   WP_000731785.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3833..15602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS11065 (SMSK321_1658) recA 4759..5913 (+) 1155 WP_001085454.1 recombinase RecA Machinery gene
  SMSK321_RS11070 (SMSK321_1659) - 6028..7398 (+) 1371 WP_001036240.1 MATE family efflux transporter -
  SMSK321_RS11075 (SMSK321_1660) - 7495..8211 (+) 717 WP_000532883.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SMSK321_RS11080 (SMSK321_1661) - 8388..8858 (+) 471 WP_000360539.1 MarR family winged helix-turn-helix transcriptional regulator -
  SMSK321_RS11085 (SMSK321_1662) rcrP 8833..10602 (+) 1770 WP_000731785.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS11090 (SMSK321_1663) rcrQ 10592..12352 (+) 1761 WP_000428276.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS11095 (SMSK321_1664) - 12448..12951 (+) 504 WP_000800905.1 phosphatase PAP2 family protein -
  SMSK321_RS11100 (SMSK321_1665) - 13070..13516 (+) 447 WP_000776598.1 LytTR family DNA-binding domain-containing protein -
  SMSK321_RS11105 (SMSK321_1666) - 13521..14195 (+) 675 WP_000725712.1 LiaF transmembrane domain-containing protein -
  SMSK321_RS11110 (SMSK321_1667) rpmB 14301..14489 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  SMSK321_RS11115 (SMSK321_1668) - 14644..15009 (+) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65343.87 Da        Isoelectric Point: 6.3862

>NTDB_id=64523 SMSK321_RS11085 WP_000731785.1 8833..10602(+) (rcrP) [Streptococcus mitis SK321]
MKKLAKRISRKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMVGMSFLAFLSVVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAPIARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQVQLADENLKGQVEFKDVTFRYAANSEAVIEHVSFKAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSEGEILV
DGVNVQGYALEDLRNKVGYIPQKAVLFSGDVKGNLDFGQSQETPLSEQAMWQALELAQSKNFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=64523 SMSK321_RS11085 WP_000731785.1 8833..10602(+) (rcrP) [Streptococcus mitis SK321]
ATGAAGAAATTAGCCAAACGAATTAGTAGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGT
CTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTACGGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGT
TGTGGCAGCCGGCAAGCATGATGGTGGGAATGTCCTTTCTTGCCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCC
CGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATTTTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAA
GAAATTCTCTATTCCTAGCCTCTTGACGCGTACTACCAATGATATTACTCAGGTTCAAATGTTGATTACCATGGGCTTGC
AAGTGGTAACACGTGGTCCGATTATGGCTATCTGGGCTATTGGGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACTGTTTTGATGACGCTAGCCTTTCCAAAACAATCCTTGATTCA
GGGGCTGACAGATAAACTGAACAGTATCACTCGTGAAAGTTTAACAGGTATTCGTGTCGTTCGTGCCTACAATGCTGAAG
AATACCAAAATGAAAAATTTGCAGCAGCCAATGATGAATTGACACGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAATGACGC
TGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGTTTTCATGTCTTATGCTATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCAT
TCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTCGAATTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCGGTTATCGAGCATGTCAGCTTTAAAGCAGAAGCTGGTCAAACAGTGGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGATGTGTCAGAAGGAGAAATTCTGGTG
GATGGTGTCAATGTTCAAGGCTATGCCTTAGAAGATTTGCGCAACAAGGTTGGTTATATTCCCCAGAAAGCGGTTCTCTT
TTCAGGTGATGTTAAGGGCAATCTAGACTTTGGACAGAGTCAAGAAACACCACTTAGTGAGCAGGCTATGTGGCAGGCTT
TGGAGTTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTAGCGTCAGAAGTGGCCCAAGGAGGAACTAAC
TTCTCAGGTGGTCAAAGACAGCGTCTGGCTATTGCGCGTGCCTTGGCTCGCAAGCCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCCTTGGACTACAAGACAGACCGAGTCCTACGCCAAGAGTTAGCAGAGAAAACCAAGTCTATGACTAAGCTCA
TCGTCGCACAGCGTATTTCAACGATTATGGATGCAGATTTGATTTTGGTTTTGGATCAAGGAAAAGTCGTGGGGCAAGGC
ACCCATAAAGAACTTCTAGCAAACAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.389

100

0.677

Multiple sequence alignment