Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SMSK321_RS11090 Genome accession   NZ_AEDT01000034
Coordinates   10592..12352 (+) Length   586 a.a.
NCBI ID   WP_000428276.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5592..17352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS11070 (SMSK321_1659) - 6028..7398 (+) 1371 WP_001036240.1 MATE family efflux transporter -
  SMSK321_RS11075 (SMSK321_1660) - 7495..8211 (+) 717 WP_000532883.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SMSK321_RS11080 (SMSK321_1661) - 8388..8858 (+) 471 WP_000360539.1 MarR family winged helix-turn-helix transcriptional regulator -
  SMSK321_RS11085 (SMSK321_1662) rcrP 8833..10602 (+) 1770 WP_000731785.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS11090 (SMSK321_1663) rcrQ 10592..12352 (+) 1761 WP_000428276.1 ABC transporter ATP-binding protein Regulator
  SMSK321_RS11095 (SMSK321_1664) - 12448..12951 (+) 504 WP_000800905.1 phosphatase PAP2 family protein -
  SMSK321_RS11100 (SMSK321_1665) - 13070..13516 (+) 447 WP_000776598.1 LytTR family DNA-binding domain-containing protein -
  SMSK321_RS11105 (SMSK321_1666) - 13521..14195 (+) 675 WP_000725712.1 LiaF transmembrane domain-containing protein -
  SMSK321_RS11110 (SMSK321_1667) rpmB 14301..14489 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  SMSK321_RS11115 (SMSK321_1668) - 14644..15009 (+) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  SMSK321_RS11120 (SMSK321_1669) - 15012..16679 (+) 1668 WP_000036655.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64793.55 Da        Isoelectric Point: 4.9156

>NTDB_id=64524 SMSK321_RS11090 WP_000428276.1 10592..12352(+) (rcrQ) [Streptococcus mitis SK321]
MENKKMSLWKQSKPYLAGLQFALLIAFLATIVSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGSFLAVIYVIGLL
SNYLQAFLFTTTIQRFSERLRRAIAEKINRLPLGYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVLAVLVTM
FGMNWILALVTVVSTLVGFAFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGHISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMEDESHKERQLSDMKGQVVFDRVSFGYTPERTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDGVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKGISDESVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMMQAGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=64524 SMSK321_RS11090 WP_000428276.1 10592..12352(+) (rcrQ) [Streptococcus mitis SK321]
ATGGAAAATAAGAAAATGTCTCTTTGGAAACAGAGTAAACCCTATCTTGCAGGTCTCCAGTTTGCCCTTCTAATCGCCTT
TCTAGCAACAATCGTATCCAATATCATTACTGTATATGGTCCAACCCGCATCAAGGAAATGACTAATATCATTGCCAGTG
GTCTGGAAACAAGTGTGGATGTCGCAGCGGTTGCAGCTATTGGTAGTTTTTTGGCCGTCATCTATGTAATTGGGCTTCTA
TCAAATTATTTGCAGGCCTTTCTGTTTACAACAACCATTCAACGTTTTTCAGAGCGTTTGAGAAGAGCTATTGCAGAGAA
AATTAATCGCCTTCCATTGGGATATTTTGATGGACATTCTCAAGGAGATACCTTGTCTCGTGTAACCAATGATGTTGACA
CTGCAGCCCAGTCCCTTAATCAAAGTCTGGGAACAGTTCTTTCATCTAGTTTACTGGTCTTAGCAGTCTTAGTAACCATG
TTTGGGATGAACTGGATTTTAGCCTTGGTGACGGTTGTTTCAACTCTTGTTGGATTTGCTTTCGTGTCCGTCTTTATGGG
CAAATCCCAGGGCTTCTTTAAGAGTCAGCAACAGGATTTGGCAGCTGTCAATGGTTATGTGGAAGAAATGTACTCTGGCC
ATAATGTAGTGACCAGTTACAATGCTATCGAGAGTACGAAAGAAGAGTTTGCGAAATTAAACAATCGTCTGTATGATAGT
ATCTGGAAATCTCAGTTTATTTCAGGGATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATCGTTGGTGCTGCCTTGGCTTTAAATGGACACATCAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCTCTTTCACAAATTGCCCAAGGGATTACTAGTCTTCAGCAGGCTAGTGCAGCCATGGGACGTGTCTTCGAA
TTCCTAGCTGAAGAGGAAATGGAAGACGAATCCCATAAAGAAAGACAATTGAGCGATATGAAAGGTCAAGTAGTCTTTGA
TCGAGTCTCTTTTGGTTACACACCAGAGCGAACCATCATCCATGACTTTTCTGCGACTGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACCGGAGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAGTTCTATGAGATTGATAAGGGAAGT
ATCCGCATCGATGGTGTGGATACCAAGGAGATGAAGCGTTCGGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGATAC
TTGGCTCTTTGAAGGTACTATCCGAGATAATCTCATCTATAACCAAAAGGGGATTAGTGATGAGAGTGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATCATGACTCTACCAGATGGTTACGATACCGTCTTGGATGATACAGTTACCTTG
TCTGTCGGGCAAAAACAACTCTTAACTATTGCTCGTGCTTTGTTAAAAGATGCGCCACTCCTAATCCTAGATGAGGCGAC
TTCTTCTGTTGATACCCGTACAGAGGAATTGATTCAGAAAGCTATGGATCGTTTGATGGAGGGCAGAACTTCCTTTGTCA
TCGCTCACCGCTTGTCAACCATCCGTAATGCTGATCTTATTCTGGTTATGAAAGATGGCAATATCATCGAGCAAGGAAAT
CATGACGAGCTAATGATGCAAGCTGGTTTCTACGCTGACCTCTACAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

66.781

99.659

0.666

Multiple sequence alignment