Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   L0994_RS04740 Genome accession   NZ_CP090847
Coordinates   993589..994977 (+) Length   462 a.a.
NCBI ID   WP_010437172.1    Uniprot ID   A0AAN0NB30
Organism   Vibrio cyclitrophicus strain WXL032     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 988589..999977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0994_RS04720 (L0994_04700) rsxB 989128..989721 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  L0994_RS04725 (L0994_04705) rsxA 989724..990302 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  L0994_RS04735 (L0994_04715) uvrB 991256..993286 (+) 2031 WP_016767675.1 excinuclease ABC subunit UvrB -
  L0994_RS04740 (L0994_04720) luxO 993589..994977 (+) 1389 WP_010437172.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  L0994_RS04745 (L0994_04725) luxU 995002..995346 (+) 345 WP_010437174.1 quorum-sensing phosphorelay protein LuxU -
  L0994_RS04750 (L0994_04730) - 995427..996314 (-) 888 WP_016793852.1 YvcK family protein -
  L0994_RS04755 (L0994_04735) moaA 996650..997639 (+) 990 WP_010437176.1 GTP 3',8-cyclase MoaA -
  L0994_RS04760 (L0994_04740) moaB 997729..998241 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  L0994_RS04765 (L0994_04745) moaC 998254..998733 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  L0994_RS04770 (L0994_04750) moaD 998730..998975 (+) 246 WP_010437182.1 molybdopterin synthase sulfur carrier subunit -
  L0994_RS04775 (L0994_04755) moaE 998978..999451 (+) 474 WP_016793853.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51715.26 Da        Isoelectric Point: 6.0301

>NTDB_id=645217 L0994_RS04740 WP_010437172.1 993589..994977(+) (luxO) [Vibrio cyclitrophicus strain WXL032]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIESSL
RLKEMQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=645217 L0994_RS04740 WP_010437172.1 993589..994977(+) (luxO) [Vibrio cyclitrophicus strain WXL032]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCCGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATCTTATTAGATCTGCGCCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCAGAAGTCCCCGTTATCTTCATGACGGCTCACGGCTCTATCGATACCGCAGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGATCGACTCCGTATAACGGTGAATAACGCGATACGCAAAGCCACTAAACTGAAGA
ACAGTTCTGAAAACCCGGGTAATCAAAACTATCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTATCGAACA
ATCGATTCCGCGGCATCGAGTAAAGCGAGTATTTTCATTACCGGTGAAAGTGGTACCGGAAAAGAGGTGTGTGCAGAAGC
GATTCACGCGGCGAGTAAGCGTGGTGATAAGCCATTCATTGCGATTAACTGTGCGGCTATTCCTAAAGATTTAATCGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCCTTTACTGGCGCTGCAACCGATCGTCAAGGTGCGGCTGAACTTGCCGATGGT
GGAACCTTGTTCCTCGATGAGTTGTGTGAGATGGATCTTGAGCTACAAACCAAGCTTTTGCGTTTTATTCAAACGGGCAC
TTTCCAAAAAGTAGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTTGTATGTGCAACCAACCGAGACCCTTGGAAAG
AAGTCCAAGAAGGTCGCTTTAGAGAAGATTTGTACTACCGTTTATATGTAATTCCACTGCACCTACCGCCATTGCGTGAG
CGTGGCGAGGATGTTATCGAGATTGCATATTCACTGCTGGGCTACATGTCTGTTGAGGAAGGTAAGGCCTTTGTTCGTTT
TGCTCAGGAAGTGCTGGACCGCTTTAACCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAATGTGTTGCGAAACG
TGGTGGTACTGAACAATGGTAAAGAGATTACCCTGAACATGCTTCCACCTCCACTGAACCAGCCGATTGAGAGCAGTCTG
CGGTTGAAAGAGATGCAAAATGAAGACATCACTGTAAAAGACATTTTCCCATTGTGGATCACTGAAAAAACAGCGATTGA
ACAGGCCATAAAAGCATGTGATGGCAACATCCCTCGTGCGGCAGGCTTCTTAGATGTCAGTCCATCGACGATATATCGTA
AGTTACAAACGTGGAATGCGAAGCAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37