Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   L0990_RS11750 Genome accession   NZ_CP090843
Coordinates   2673456..2674061 (+) Length   201 a.a.
NCBI ID   WP_032547912.1    Uniprot ID   A0A120DGB0
Organism   Vibrio kanaloae strain A6-11SW3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2668456..2679061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS11730 (L0990_11725) - 2668687..2669604 (-) 918 WP_017056623.1 ABC transporter ATP-binding protein -
  L0990_RS11735 (L0990_11730) - 2669910..2671541 (-) 1632 WP_046223322.1 SulP family inorganic anion transporter -
  L0990_RS11740 (L0990_11735) can 2671828..2672487 (+) 660 WP_046223321.1 carbonate dehydratase -
  L0990_RS11745 (L0990_11740) hpt 2672592..2673122 (-) 531 WP_017056620.1 hypoxanthine phosphoribosyltransferase -
  L0990_RS11750 (L0990_11745) opaR 2673456..2674061 (+) 606 WP_032547912.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  L0990_RS11755 (L0990_11750) lpdA 2674271..2675701 (-) 1431 WP_017056618.1 dihydrolipoyl dehydrogenase -
  L0990_RS11760 (L0990_11755) aceF 2675944..2677827 (-) 1884 WP_373937768.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23333.58 Da        Isoelectric Point: 6.2928

>NTDB_id=645126 L0990_RS11750 WP_032547912.1 2673456..2674061(+) (opaR) [Vibrio kanaloae strain A6-11SW3]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKKNLHNIATEMVNLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGDVCDEHDPK
HLANLFHGICYSLFIQAKRLETPEEQENLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=645126 L0990_RS11750 WP_032547912.1 2673456..2674061(+) (opaR) [Vibrio kanaloae strain A6-11SW3]
ATGGACTCAATATCTAAGAGGCCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGAGGTGGCCACGCAGATATCGCAGATATTGCTCAGGTGTCTGTAGCAACTGTAT
TTAACTACTTCCCTACCCGAGAAGATCTGGTCGATGAAGTACTGAATCATGTCGTACGCCAATTCTCTAACTTCCTTTCA
GATAATATCGATCTCGATATTCACGCGAAAAAAAATCTACATAATATTGCCACTGAAATGGTTAACTTAGTGGCTCAAGA
TAGCCATTGGCTGAATGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTATGGCCTTTATTTGTCACAACCAACC
GCACTAACCAAATGTTATTACAAAATATGTTTAGTAAGGCGATTGAGCGTGGAGATGTGTGTGATGAGCATGATCCTAAG
CATCTTGCGAACCTATTTCACGGCATCTGCTACTCGTTATTCATTCAAGCAAAACGTCTCGAAACGCCAGAAGAGCAAGA
AAACTTAACAGACAGCTACTTAAACATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120DGB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81

99.502

0.806
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726