Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   LT978_RS07535 Genome accession   NZ_CP090838
Coordinates   1463578..1464015 (+) Length   145 a.a.
NCBI ID   WP_043867285.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458578..1469015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS07510 (LT978_07505) - 1458592..1459893 (-) 1302 WP_014305416.1 hemolysin family protein -
  LT978_RS07515 (LT978_07510) - 1460039..1460989 (+) 951 WP_003153082.1 magnesium transporter CorA family protein -
  LT978_RS07520 (LT978_07515) comGA 1461181..1462251 (+) 1071 WP_139890048.1 competence type IV pilus ATPase ComGA Machinery gene
  LT978_RS07525 (LT978_07520) comGB 1462238..1463275 (+) 1038 WP_139890049.1 competence type IV pilus assembly protein ComGB Machinery gene
  LT978_RS07530 (LT978_07525) comGC 1463280..1463588 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  LT978_RS07535 (LT978_07530) comGD 1463578..1464015 (+) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  LT978_RS07540 (LT978_07535) comGE 1463999..1464313 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  LT978_RS07545 (LT978_07540) comGF 1464327..1464722 (+) 396 WP_046559876.1 competence type IV pilus minor pilin ComGF -
  LT978_RS07550 (LT978_07545) comGG 1464723..1465100 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  LT978_RS07555 (LT978_07550) - 1465157..1465336 (+) 180 WP_003153093.1 YqzE family protein -
  LT978_RS07560 (LT978_07555) - 1465376..1465705 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  LT978_RS07565 (LT978_07560) tapA 1465965..1466636 (+) 672 WP_015388007.1 amyloid fiber anchoring/assembly protein TapA -
  LT978_RS07570 (LT978_07565) sipW 1466608..1467192 (+) 585 WP_109567595.1 signal peptidase I SipW -
  LT978_RS07575 (LT978_07570) tasA 1467256..1468041 (+) 786 WP_015388008.1 biofilm matrix protein TasA -
  LT978_RS07580 (LT978_07575) sinR 1468089..1468424 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  LT978_RS07585 (LT978_07580) sinI 1468458..1468631 (-) 174 WP_003153105.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16268.79 Da        Isoelectric Point: 10.3354

>NTDB_id=645063 LT978_RS07535 WP_043867285.1 1463578..1464015(+) (comGD) [Bacillus amyloliquefaciens strain TL106]
MNNNRRTENGFTLLESLVVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=645063 LT978_RS07535 WP_043867285.1 1463578..1464015(+) (comGD) [Bacillus amyloliquefaciens strain TL106]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGGTTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGTAGGATTGTCGAGCGTTCTTTTGATTCACTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566