Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   STRSA0001_RS00910 Genome accession   NZ_ACLO01000018
Coordinates   1308..2627 (-) Length   439 a.a.
NCBI ID   WP_002883821.1    Uniprot ID   -
Organism   Streptococcus salivarius SK126     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..7627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRSA0001_RS00900 (STRSA0001_1714) hpf 38..586 (-) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  STRSA0001_RS00905 (STRSA0001_1715) - 665..1327 (-) 663 WP_002883740.1 ComF family protein -
  STRSA0001_RS00910 (STRSA0001_1716) comFA/cflA 1308..2627 (-) 1320 WP_002883821.1 DEAD/DEAH box helicase Machinery gene
  STRSA0001_RS00915 (STRSA0001_1717) - 2682..3308 (+) 627 WP_002883729.1 YigZ family protein -
  STRSA0001_RS00920 (STRSA0001_1718) cysK 3410..4336 (+) 927 WP_002883742.1 cysteine synthase A -
  STRSA0001_RS00925 (STRSA0001_1719) - 4515..5174 (-) 660 WP_002883751.1 CBS and ACT domain-containing protein -
  STRSA0001_RS00930 (STRSA0001_1720) - 5309..6019 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  STRSA0001_RS00935 (STRSA0001_1721) - 6019..6783 (-) 765 WP_002883723.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 50662.63 Da        Isoelectric Point: 8.9952

>NTDB_id=64489 STRSA0001_RS00910 WP_002883821.1 1308..2627(-) (comFA/cflA) [Streptococcus salivarius SK126]
MVPKEYYGRLFTKEQLPVDYHSEAFTLESMIKVDKKLRCKRCYSQIEEDWQLPEGQYYCRACIVFGRNQEGNELYYFPSK
TSEIEFPVLKWLGELTPYQAEVSEKLLETYQKQKDSLVHAVTGAGKTEMIYKIVAYVLESKGNVAIASPRVDVCRELFLR
MQRDFTCSISLLHAESEPYDGSPLVIATTHQLLKFYQNFDLVIVDEVDAFPFVGNVMLNHAVEQAKKETGRYIYLTATST
LSLEEQVRLGSLEKHHLARRFHGNPLVLPKFFWQGRLQKSLMRGKLPRPLVYQIKKQRKSKFPLLIFFPNIAIGEKFTSI
LQKYLPDEKMAFVSSKSEERSATVEQFREKELSILVTTTILERGVTFPQVDVFVCMASHHLYTSSSLIQIGGRVGRSPDR
PTGKLYFFHEGLSKSMLRCREEIKVMNKKGGFNNEVSTM

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=64489 STRSA0001_RS00910 WP_002883821.1 1308..2627(-) (comFA/cflA) [Streptococcus salivarius SK126]
ATGGTACCTAAAGAATATTATGGACGACTATTTACGAAAGAACAGTTGCCAGTGGACTATCACTCAGAGGCTTTTACATT
AGAAAGCATGATAAAGGTCGATAAAAAACTTAGATGTAAAAGATGTTACAGTCAGATAGAGGAAGATTGGCAATTACCGG
AAGGTCAGTATTATTGCAGAGCATGTATTGTCTTTGGTAGAAATCAAGAAGGAAATGAACTCTATTATTTTCCTTCAAAA
ACATCTGAAATTGAATTTCCTGTTTTGAAGTGGTTGGGGGAACTGACTCCCTATCAAGCTGAGGTCTCAGAGAAGCTTTT
AGAAACATATCAAAAACAGAAAGACAGCCTCGTACATGCTGTGACCGGTGCTGGTAAGACCGAGATGATTTATAAAATCG
TTGCCTATGTTCTTGAAAGTAAAGGTAATGTAGCTATCGCAAGTCCTCGGGTTGATGTTTGTCGAGAGTTATTTCTTCGT
ATGCAGAGGGATTTTACTTGTAGTATTTCTCTGCTTCATGCTGAGAGTGAACCATATGATGGTAGTCCGCTTGTAATAGC
TACCACCCATCAACTACTAAAGTTTTATCAGAACTTTGACCTAGTTATCGTTGATGAGGTTGATGCATTCCCTTTTGTAG
GAAATGTCATGTTAAATCATGCTGTGGAGCAGGCAAAGAAGGAAACCGGTCGCTATATTTATTTAACAGCGACTTCTACA
TTATCTTTAGAGGAGCAAGTGCGACTTGGATCTTTAGAAAAGCATCACCTTGCTAGACGTTTCCATGGAAATCCTTTAGT
ACTTCCTAAATTCTTTTGGCAGGGAAGACTACAAAAATCTCTAATGAGAGGCAAGCTTCCAAGACCTCTTGTTTATCAGA
TTAAAAAGCAACGTAAATCCAAATTCCCTCTATTAATCTTTTTTCCAAATATAGCGATAGGTGAAAAGTTTACTAGCATT
CTGCAAAAATATCTTCCAGACGAAAAAATGGCCTTTGTTTCATCAAAAAGCGAGGAGCGTTCAGCTACCGTAGAGCAGTT
CCGGGAAAAAGAGTTATCCATCTTAGTGACAACAACTATCCTTGAACGTGGGGTAACCTTTCCACAAGTAGATGTTTTTG
TTTGTATGGCAAGTCATCACTTATACACTAGTTCGAGTCTTATTCAGATAGGAGGTCGAGTTGGAAGATCCCCAGATAGA
CCGACGGGAAAGCTTTATTTCTTTCATGAAGGACTATCCAAATCAATGCTTCGTTGTCGAGAAGAAATAAAGGTTATGAA
TAAAAAAGGAGGATTTAACAATGAAGTGTCTACTATGTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-170)

Helicase conserved C-terminal domain (Helicase_C)

(290-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

56.381

98.178

0.554
  comFA/cflA Streptococcus pneumoniae D39

56.381

98.178

0.554
  comFA/cflA Streptococcus pneumoniae R6

56.381

98.178

0.554
  comFA/cflA Streptococcus pneumoniae TIGR4

56.381

98.178

0.554
  comFA/cflA Streptococcus mitis NCTC 12261

55.53

98.861

0.549
  comFA/cflA Streptococcus mitis SK321

54.988

98.178

0.54
  comFA Lactococcus lactis subsp. cremoris KW2

45.952

95.672

0.44
  comFA Latilactobacillus sakei subsp. sakei 23K

37.844

99.317

0.376

Multiple sequence alignment