Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LZI70_RS09670 Genome accession   NZ_CP090614
Coordinates   2130429..2131034 (-) Length   201 a.a.
NCBI ID   WP_255229942.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2125429..2136034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS09660 (LZI70_09645) aceF 2126617..2128539 (+) 1923 WP_255229940.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  LZI70_RS09665 (LZI70_09650) lpdA 2128780..2130210 (+) 1431 WP_255229941.1 dihydrolipoyl dehydrogenase -
  LZI70_RS09670 (LZI70_09655) opaR 2130429..2131034 (-) 606 WP_255229942.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LZI70_RS09675 (LZI70_09660) hpt 2131372..2131902 (+) 531 WP_255229943.1 hypoxanthine phosphoribosyltransferase -
  LZI70_RS09680 (LZI70_09665) can 2131965..2132633 (-) 669 WP_255229944.1 carbonate dehydratase -
  LZI70_RS09685 (LZI70_09670) - 2132877..2134547 (+) 1671 WP_255229945.1 SulP family inorganic anion transporter -
  LZI70_RS09690 (LZI70_09675) - 2134771..2135688 (+) 918 WP_255229946.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23323.65 Da        Isoelectric Point: 6.4903

>NTDB_id=644010 LZI70_RS09670 WP_255229942.1 2130429..2131034(-) (opaR) [Vibrio pelagius strain WXL662]
MDSISKRPRTRLSPLKRKLQLMEIALEVFARRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLTNITNEMLTLVEQDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFVKAIERGEVCDQHEPK
HLANLFHGICYSLFIQAKRANSTEELHSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=644010 LZI70_RS09670 WP_255229942.1 2130429..2131034(-) (opaR) [Vibrio pelagius strain WXL662]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTTCAATTGATGGAGATTGCACTTGA
AGTATTCGCCCGTCGCGGCATTGGCCGAGGTGGACACGCAGATATCGCAGACATTGCTCAAGTATCTGTCGCAACTGTAT
TTAACTACTTCCCAACGCGTGAAGATCTGGTCGACGAGGTTCTAAACCATGTTGTTCGTCAGTTCTCAAACTTTCTTTCA
GACAATATTGACCTCGATATTCACGCTAAGCAGAACTTAACAAACATCACCAATGAGATGCTTACTCTTGTTGAGCAAGA
TTGTCACTGGCTCAATGTTTGGTTCGAGTGGAGCGCGTCAACTCGTGATGAAGTATGGCCACTGTTCGTAACAACCAACC
GCACTAACCAGATGCTGGTACAGAACATGTTCGTTAAAGCGATCGAGCGTGGTGAAGTTTGCGACCAACATGAACCGAAA
CACTTGGCGAACCTATTCCACGGTATTTGCTACTCGCTGTTCATCCAAGCGAAGCGTGCAAACTCAACTGAAGAATTGCA
CTCATTGACTGACAGCTACCTAAATATGCTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

84.5

99.502

0.841
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726