Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LQQ45_RS19715 Genome accession   NZ_CP090607
Coordinates   3927459..3928199 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain MRSN 58     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3922459..3933199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQQ45_RS19695 (LQQ45_19695) aroB 3923001..3924083 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LQQ45_RS19700 (LQQ45_19700) aroK 3924112..3924681 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LQQ45_RS19705 (LQQ45_19705) pilQ 3924693..3926858 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  LQQ45_RS19710 (LQQ45_19710) pilP 3926921..3927448 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  LQQ45_RS19715 (LQQ45_19715) pilO 3927459..3928199 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LQQ45_RS19720 (LQQ45_19720) pilN 3928196..3928837 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  LQQ45_RS19725 (LQQ45_19725) pilM 3928837..3929895 (-) 1059 WP_005115308.1 pilus assembly protein PilM Machinery gene
  LQQ45_RS19730 (LQQ45_19730) ponA 3930057..3932612 (+) 2556 WP_000736662.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=643938 LQQ45_RS19715 WP_000076101.1 3927459..3928199(-) (pilO) [Acinetobacter baumannii strain MRSN 58]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=643938 LQQ45_RS19715 WP_000076101.1 3927459..3928199(-) (pilO) [Acinetobacter baumannii strain MRSN 58]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGAGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683