Detailed information NTG0643920

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: LQQ45_RS10725
• Genome accession: NZ_CP090607
• Coordinates: 2064355..2065056 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain MRSN 58
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2059355..2070056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQQ45_RS10690 (LQQ45_10690)	kdsB	2059878..2060639 (+)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LQQ45_RS10695 (LQQ45_10695)	-	2060651..2061631 (+)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
LQQ45_RS10700 (LQQ45_10700)	-	2061643..2061984 (+)	342	WP_001183027.1	PilZ domain-containing protein	-
LQQ45_RS10705 (LQQ45_10705)	-	2062002..2062775 (+)	774	WP_000497300.1	TatD family hydrolase	-
LQQ45_RS10710 (LQQ45_10710)	-	2062813..2063421 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
LQQ45_RS10715 (LQQ45_10715)	-	2063431..2063985 (+)	555	WP_000841373.1	type II secretion system protein	-
LQQ45_RS10720 (LQQ45_10720)	xcpV	2063975..2064355 (+)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
LQQ45_RS10725 (LQQ45_10725)	xcpW	2064355..2065056 (+)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
LQQ45_RS10730 (LQQ45_10730)	gspK	2065056..2066015 (+)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
LQQ45_RS10735 (LQQ45_10735)	-	2066245..2066841 (+)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
LQQ45_RS10740 (LQQ45_10740)	ung	2066892..2067605 (+)	714	WP_001177527.1	uracil-DNA glycosylase	-
LQQ45_RS10745 (LQQ45_10745)	-	2067602..2068726 (+)	1125	WP_003114973.1	enoyl-CoA hydratase/isomerase family protein	-
LQQ45_RS10750 (LQQ45_10750)	tadA	2068733..2069236 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
LQQ45_RS10755 (LQQ45_10755)	-	2069306..2069749 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=643920 LQQ45_RS10725 WP_000594579.1 2064355..2065056(+) (xcpW) [Acinetobacter baumannii strain MRSN 58]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=643920 LQQ45_RS10725 WP_000594579.1 2064355..2065056(+) (xcpW) [Acinetobacter baumannii strain MRSN 58]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983