Detailed information NTG0643861

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0Y24_RS15160
• Genome accession: NZ_CP090597
• Coordinates: 3385042..3385887 (-)
• Length: 281 a.a.
• NCBI ID: WP_181845365.1
• Uniprot ID: A0AAW3SY54
• Organism: Pectobacterium aroidearum strain QJ002
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3380042..3390887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0Y24_RS15135 (L0Y24_15115)	-	3380097..3380867 (-)	771	WP_181848772.1	ABC transporter ATP-binding protein	-
L0Y24_RS15140 (L0Y24_15120)	-	3380869..3381906 (-)	1038	WP_256598749.1	iron ABC transporter permease	-
L0Y24_RS15145 (L0Y24_15125)	-	3381903..3382967 (-)	1065	WP_256598750.1	ABC transporter substrate-binding protein	-
L0Y24_RS15150 (L0Y24_15130)	-	3383443..3384468 (+)	1026	WP_256543058.1	LLM class flavin-dependent oxidoreductase	-
L0Y24_RS15155 (L0Y24_15135)	ypdK	3384825..3384899 (+)	75	WP_099606229.1	membrane protein YpdK	-
L0Y24_RS15160 (L0Y24_15140)	pilD	3385042..3385887 (-)	846	WP_181845365.1	A24 family peptidase	Machinery gene
L0Y24_RS15165 (L0Y24_15145)	-	3385995..3386741 (-)	747	WP_015841039.1	type II secretion system protein N	-
L0Y24_RS15170 (L0Y24_15150)	gspM	3386731..3387225 (-)	495	WP_181845366.1	type II secretion system protein GspM	-
L0Y24_RS15175 (L0Y24_15155)	gspL	3387222..3388499 (-)	1278	WP_256598751.1	type II secretion system protein GspL	-
L0Y24_RS15180 (L0Y24_15160)	gspK	3388496..3389482 (-)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
L0Y24_RS15185 (L0Y24_15165)	gspJ	3389479..3390129 (-)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
L0Y24_RS15190 (L0Y24_15170)	gspI	3390129..3390494 (-)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31262.36 Da
• Isoelectric Point: 7.5855

>NTDB_id=643861 L0Y24_RS15160 WP_181845365.1 3385042..3385887(-) (pilD) [Pectobacterium aroidearum strain QJ002]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTNTEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=643861 L0Y24_RS15160 WP_181845365.1 3385042..3385887(-) (pilD) [Pectobacterium aroidearum strain QJ002]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCAATACCGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTGCGCGGCCGTTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATCACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGCTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTCCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATAAACGGACTCTATCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.416	91.459	0.452
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	41.971	97.509	0.409
pilD	Acinetobacter nosocomialis M2	41.971	97.509	0.409