Detailed information NTG0643838

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0Y20_RS15725
• Genome accession: NZ_CP090596
• Coordinates: 3466900..3467745 (-)
• Length: 281 a.a.
• NCBI ID: WP_181845365.1
• Uniprot ID: A0AAW3SY54
• Organism: Pectobacterium aroidearum strain QJ003
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3461900..3472745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0Y20_RS15700 (L0Y20_15675)	-	3461955..3462725 (-)	771	WP_181848772.1	ABC transporter ATP-binding protein	-
L0Y20_RS15705 (L0Y20_15680)	-	3462727..3463764 (-)	1038	WP_256598749.1	iron ABC transporter permease	-
L0Y20_RS15710 (L0Y20_15685)	-	3463761..3464825 (-)	1065	WP_256598750.1	ABC transporter substrate-binding protein	-
L0Y20_RS15715 (L0Y20_15690)	-	3465301..3466326 (+)	1026	WP_256543058.1	LLM class flavin-dependent oxidoreductase	-
L0Y20_RS15720 (L0Y20_15695)	ypdK	3466683..3466757 (+)	75	WP_099606229.1	membrane protein YpdK	-
L0Y20_RS15725 (L0Y20_15700)	pilD	3466900..3467745 (-)	846	WP_181845365.1	A24 family peptidase	Machinery gene
L0Y20_RS15730 (L0Y20_15705)	-	3467853..3468599 (-)	747	WP_015841039.1	type II secretion system protein N	-
L0Y20_RS15735 (L0Y20_15710)	gspM	3468589..3469083 (-)	495	WP_181845366.1	type II secretion system protein GspM	-
L0Y20_RS15740 (L0Y20_15715)	gspL	3469080..3470357 (-)	1278	WP_256598751.1	type II secretion system protein GspL	-
L0Y20_RS15745 (L0Y20_15720)	gspK	3470354..3471340 (-)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
L0Y20_RS15750 (L0Y20_15725)	gspJ	3471337..3471987 (-)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
L0Y20_RS15755 (L0Y20_15730)	gspI	3471987..3472352 (-)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31262.36 Da
• Isoelectric Point: 7.5855

>NTDB_id=643838 L0Y20_RS15725 WP_181845365.1 3466900..3467745(-) (pilD) [Pectobacterium aroidearum strain QJ003]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTNTEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=643838 L0Y20_RS15725 WP_181845365.1 3466900..3467745(-) (pilD) [Pectobacterium aroidearum strain QJ003]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCAATACCGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTGCGCGGCCGTTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATCACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGCTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTCCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATAAACGGACTCTATCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.416	91.459	0.452
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	41.971	97.509	0.409
pilD	Acinetobacter nosocomialis M2	41.971	97.509	0.409