Detailed information NTG0643724

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L0Y30_RS06760
• Genome accession: NZ_CP090591
• Coordinates: 1509261..1510106 (+)
• Length: 281 a.a.
• NCBI ID: WP_181845365.1
• Uniprot ID: A0AAW3SY54
• Organism: Pectobacterium aroidearum strain QJ313
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1504261..1515106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0Y30_RS06730 (L0Y30_06720)	gspI	1504654..1505019 (+)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-
L0Y30_RS06735 (L0Y30_06725)	gspJ	1505019..1505669 (+)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
L0Y30_RS06740 (L0Y30_06730)	gspK	1505666..1506652 (+)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
L0Y30_RS06745 (L0Y30_06735)	gspL	1506649..1507926 (+)	1278	WP_256604755.1	type II secretion system protein GspL	-
L0Y30_RS06750 (L0Y30_06740)	gspM	1507923..1508417 (+)	495	WP_256543056.1	type II secretion system protein GspM	-
L0Y30_RS06755 (L0Y30_06745)	-	1508407..1509153 (+)	747	WP_256543057.1	type II secretion system protein N	-
L0Y30_RS06760 (L0Y30_06750)	pilD	1509261..1510106 (+)	846	WP_181845365.1	A24 family peptidase	Machinery gene
L0Y30_RS06765 (L0Y30_06755)	ypdK	1510249..1510323 (-)	75	WP_099606229.1	membrane protein YpdK	-
L0Y30_RS06770 (L0Y30_06760)	-	1510680..1511705 (-)	1026	WP_256543058.1	LLM class flavin-dependent oxidoreductase	-
L0Y30_RS06775 (L0Y30_06765)	-	1512309..1513373 (+)	1065	WP_256543059.1	ABC transporter substrate-binding protein	-
L0Y30_RS06780 (L0Y30_06770)	-	1513370..1514407 (+)	1038	WP_256543060.1	iron ABC transporter permease	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31262.36 Da
• Isoelectric Point: 7.5855

>NTDB_id=643724 L0Y30_RS06760 WP_181845365.1 1509261..1510106(+) (pilD) [Pectobacterium aroidearum strain QJ313]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTNTEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=643724 L0Y30_RS06760 WP_181845365.1 1509261..1510106(+) (pilD) [Pectobacterium aroidearum strain QJ313]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCAATACTGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGTTGGCTGTGGCTGCGCGGCCGTTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATTACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGTTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTTCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATAAACGGACTCTATCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.416	91.459	0.452
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	41.971	97.509	0.409
pilD	Acinetobacter nosocomialis M2	41.971	97.509	0.409