Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KB225_RS07380 Genome accession   NZ_CP090575
Coordinates   1579378..1580250 (-) Length   290 a.a.
NCBI ID   WP_234773805.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 11H     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1540918..1611730 1579378..1580250 within 0


Gene organization within MGE regions


Location: 1540918..1611730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB225_RS07235 (KB225_07235) yfmF 1541958..1543229 (-) 1272 WP_002439538.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  KB225_RS07240 (KB225_07240) - 1543260..1543973 (-) 714 WP_002439536.1 GntR family transcriptional regulator -
  KB225_RS07245 (KB225_07245) - 1543976..1546369 (-) 2394 WP_002439534.1 DNA translocase FtsK -
  KB225_RS07250 (KB225_07250) rnjB 1546635..1548308 (-) 1674 WP_002457357.1 ribonuclease J2 -
  KB225_RS07255 (KB225_07255) pnp 1548676..1550781 (-) 2106 WP_001832554.1 polyribonucleotide nucleotidyltransferase -
  KB225_RS07260 (KB225_07260) rpsO 1550913..1551182 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  KB225_RS07265 (KB225_07265) - 1551302..1552273 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  KB225_RS07270 (KB225_07270) truB 1552289..1553206 (-) 918 WP_002456563.1 tRNA pseudouridine(55) synthase TruB -
  KB225_RS07275 (KB225_07275) rbfA 1553344..1553694 (-) 351 WP_001829509.1 30S ribosome-binding factor RbfA -
  KB225_RS07280 (KB225_07280) infB 1553997..1556159 (-) 2163 WP_162154029.1 translation initiation factor IF-2 -
  KB225_RS07285 (KB225_07285) - 1556164..1556481 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  KB225_RS07290 (KB225_07290) rnpM 1556481..1556765 (-) 285 WP_001829465.1 RNase P modulator RnpM -
  KB225_RS07295 (KB225_07295) nusA 1556783..1558006 (-) 1224 WP_020368160.1 transcription termination factor NusA -
  KB225_RS07300 (KB225_07300) rimP 1558027..1558494 (-) 468 WP_002439519.1 ribosome maturation factor RimP -
  KB225_RS07305 (KB225_07305) - 1558673..1562983 (-) 4311 WP_002456566.1 PolC-type DNA polymerase III -
  KB225_RS07310 (KB225_07310) - 1563233..1564936 (-) 1704 WP_001829513.1 proline--tRNA ligase -
  KB225_RS07315 (KB225_07315) rseP 1564955..1566241 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  KB225_RS07320 (KB225_07320) - 1566475..1567257 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  KB225_RS07325 (KB225_07325) - 1567261..1568031 (-) 771 WP_001832561.1 isoprenyl transferase -
  KB225_RS07330 (KB225_07330) frr 1568252..1568806 (-) 555 WP_001829472.1 ribosome recycling factor -
  KB225_RS07335 (KB225_07335) pyrH 1568823..1569545 (-) 723 WP_002439511.1 UMP kinase -
  KB225_RS07340 (KB225_07340) tsf 1569686..1570564 (-) 879 WP_002439509.1 translation elongation factor Ts -
  KB225_RS07345 (KB225_07345) rpsB 1570716..1571504 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  KB225_RS07350 (KB225_07350) codY 1571867..1572637 (-) 771 WP_002439506.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  KB225_RS07355 (KB225_07355) hslU 1572661..1574064 (-) 1404 WP_234773803.1 ATP-dependent protease ATPase subunit HslU -
  KB225_RS07360 (KB225_07360) hslV 1574133..1574675 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  KB225_RS07365 (KB225_07365) xerC 1574679..1575539 (-) 861 WP_002439503.1 tyrosine recombinase XerC -
  KB225_RS07370 (KB225_07370) trmFO 1575794..1577101 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KB225_RS07375 (KB225_07375) topA 1577126..1579195 (-) 2070 WP_001829508.1 type I DNA topoisomerase -
  KB225_RS07380 (KB225_07380) dprA 1579378..1580250 (-) 873 WP_234773805.1 DNA-processing protein DprA Machinery gene
  KB225_RS07390 (KB225_07390) sucD 1581055..1581963 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  KB225_RS07395 (KB225_07395) sucC 1581985..1583151 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  KB225_RS07400 (KB225_07400) - 1583259..1584029 (-) 771 WP_234773806.1 ribonuclease HII -
  KB225_RS07405 (KB225_07405) ylqF 1584034..1584897 (-) 864 WP_002468554.1 ribosome biogenesis GTPase YlqF -
  KB225_RS07410 (KB225_07410) - 1585226..1587826 (+) 2601 WP_234773807.1 YfhO family protein -
  KB225_RS07415 (KB225_07415) - 1587819..1590422 (+) 2604 WP_020368058.1 YfhO family protein -
  KB225_RS07420 (KB225_07420) rplS 1590952..1591302 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  KB225_RS07425 (KB225_07425) trmD 1591408..1592145 (-) 738 WP_001829466.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KB225_RS07430 (KB225_07430) rimM 1592145..1592648 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  KB225_RS07435 (KB225_07435) rpsP 1592775..1593050 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  KB225_RS07440 (KB225_07440) ffh 1593296..1594663 (-) 1368 WP_001830113.1 signal recognition particle protein -
  KB225_RS07445 (KB225_07445) - 1594694..1595026 (-) 333 WP_002457379.1 putative DNA-binding protein -
  KB225_RS07450 (KB225_07450) ftsY 1595028..1596254 (-) 1227 WP_001830080.1 signal recognition particle-docking protein FtsY -
  KB225_RS07455 (KB225_07455) smc 1596251..1599820 (-) 3570 WP_002502436.1 chromosome segregation protein SMC -
  KB225_RS07460 (KB225_07460) rnc 1599947..1600684 (-) 738 WP_002470220.1 ribonuclease III -
  KB225_RS07465 (KB225_07465) - 1600799..1601032 (-) 234 WP_001830184.1 acyl carrier protein -
  KB225_RS07470 (KB225_07470) fabG 1601259..1601993 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  KB225_RS07475 (KB225_07475) fabD 1601986..1602912 (-) 927 WP_001830062.1 ACP S-malonyltransferase -
  KB225_RS07480 (KB225_07480) plsX 1602914..1603891 (-) 978 WP_001830112.1 phosphate acyltransferase PlsX -
  KB225_RS07485 (KB225_07485) fapR 1603893..1604453 (-) 561 WP_001830099.1 transcription factor FapR -
  KB225_RS07490 (KB225_07490) recG 1604612..1606660 (-) 2049 WP_020368084.1 ATP-dependent DNA helicase RecG -
  KB225_RS07495 (KB225_07495) fakA 1606864..1608522 (-) 1659 WP_002489351.1 fatty acid kinase catalytic subunit FakA -
  KB225_RS07500 (KB225_07500) - 1608537..1608911 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  KB225_RS07505 (KB225_07505) rpmB 1609269..1609457 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  KB225_RS07510 (KB225_07510) - 1609540..1610175 (-) 636 WP_002489340.1 thiamine diphosphokinase -
  KB225_RS07515 (KB225_07515) rpe 1610180..1610824 (-) 645 WP_001830173.1 ribulose-phosphate 3-epimerase -
  KB225_RS07520 (KB225_07520) rsgA 1610825..1611700 (-) 876 WP_002456227.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33745.66 Da        Isoelectric Point: 9.3616

>NTDB_id=643603 KB225_RS07380 WP_234773805.1 1579378..1580250(-) (dprA) [Staphylococcus epidermidis strain 11H]
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEVEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=643603 KB225_RS07380 WP_234773805.1 1579378..1580250(-) (dprA) [Staphylococcus epidermidis strain 11H]
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGTTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.597

99.31

0.562
  dprA Staphylococcus aureus N315

56.597

99.31

0.562