Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   KB225_RS00165 Genome accession   NZ_CP090575
Coordinates   41103..42731 (-) Length   542 a.a.
NCBI ID   WP_002495147.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 11H     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 41103..50953 41103..42731 within 0


Gene organization within MGE regions


Location: 41103..50953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB225_RS00165 (KB225_00165) ccrB 41103..42731 (-) 1629 WP_002495147.1 cassette chromosome recombinase CcrB Machinery gene
  KB225_RS00170 (KB225_00170) ccrA 42753..44102 (-) 1350 WP_020368079.1 cassette chromosome recombinase CcrA Machinery gene
  KB225_RS00175 (KB225_00175) cch1 44336..46129 (-) 1794 WP_020368078.1 cassette chromosome replicative helicase -
  KB225_RS00180 (KB225_00180) ssb 46129..46425 (-) 297 WP_000221967.1 cassette chromosome ssDNA-binding protein -
  KB225_RS00185 (KB225_00185) - 46597..48180 (+) 1584 WP_001551935.1 hypothetical protein -
  KB225_RS00190 (KB225_00190) - 48252..49184 (+) 933 WP_000364405.1 hypothetical protein -
  KB225_RS00195 (KB225_00195) - 49610..49987 (+) 378 WP_000687965.1 hypothetical protein -
  KB225_RS00200 (KB225_00200) - 50456..50953 (+) 498 WP_000051479.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62627.84 Da        Isoelectric Point: 9.9763

>NTDB_id=643577 KB225_RS00165 WP_002495147.1 41103..42731(-) (ccrB) [Staphylococcus epidermidis strain 11H]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPDLQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIRCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQQVVARVNQENQVDGASLHHDIAYKQQQYD
EVKIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFNAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKHFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=643577 KB225_RS00165 WP_002495147.1 41103..42731(-) (ccrB) [Staphylococcus epidermidis strain 11H]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAGGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGATCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTTAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGTAAC
TTGCCCCTAGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTGAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTGCAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTTCATGGTAAAGGAACGA
ATCTGCTTACAGGCATTATTCGCTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACTCTTAAAGAC
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTAATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACAGGTTG
TAGCACGTGTTAATCAAGAAAATCAAGTTGATGGCGCGTCACTTCATCACGATATCGCTTATAAGCAACAACAATATGAT
GAAGTAAAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGACTT
TATTTAATGCCAAAGAAATTAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACATTTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

97.786

100

0.978