Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LGM68_RS05630 Genome accession   NZ_CP090561
Coordinates   1338674..1340128 (-) Length   484 a.a.
NCBI ID   WP_269356851.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2530     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333674..1345128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM68_RS05605 (LGM68_05605) pilC 1333722..1334981 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  LGM68_RS05610 (LGM68_05610) - 1335326..1335754 (+) 429 Protein_1102 pilin -
  LGM68_RS05615 pilA2 1335851..1336264 (+) 414 WP_005921365.1 pilin Machinery gene
  LGM68_RS05620 (LGM68_05625) pilB 1336306..1338042 (+) 1737 WP_033836748.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LGM68_RS05625 (LGM68_05630) - 1338320..1338487 (+) 168 WP_033836746.1 hypothetical protein -
  LGM68_RS05630 (LGM68_05635) pilR 1338674..1340128 (-) 1455 WP_269356851.1 sigma-54 dependent transcriptional regulator Regulator
  LGM68_RS05635 (LGM68_05640) - 1340395..1342008 (-) 1614 WP_005921369.1 HAMP domain-containing sensor histidine kinase -
  LGM68_RS05640 (LGM68_05645) sucC 1342240..1343409 (+) 1170 WP_269356854.1 ADP-forming succinate--CoA ligase subunit beta -
  LGM68_RS05645 (LGM68_05650) sucD 1343434..1344309 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  LGM68_RS05650 (LGM68_05655) - 1344453..1344692 (+) 240 WP_269356857.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52576.41 Da        Isoelectric Point: 6.6962

>NTDB_id=643479 LGM68_RS05630 WP_269356851.1 1338674..1340128(-) (pilR) [Xanthomonas citri pv. malvacearum strain CFBP 2530]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDDRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=643479 LGM68_RS05630 WP_269356851.1 1338674..1340128(-) (pilR) [Xanthomonas citri pv. malvacearum strain CFBP 2530]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGACCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATTAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCTGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.826

95.041

0.597
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469