Detailed information NTG0643409

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LZ756_RS12075
• Genome accession: NZ_CP090547
• Coordinates: 2507855..2509267 (-)
• Length: 470 a.a.
• NCBI ID: WP_020851242.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. sandyi strain OC8
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2502855..2514267

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ756_RS12055 (LZ756_12055)	-	2502978..2503424 (+)	447	WP_020851238.1	pilin	-
LZ756_RS12060 (LZ756_12060)	-	2503663..2503890 (-)	228	WP_020851239.1	hypothetical protein	-
LZ756_RS12065 (LZ756_12065)	-	2504729..2505181 (+)	453	WP_020851240.1	pilin	-
LZ756_RS12070 (LZ756_12070)	pilB	2506028..2507761 (+)	1734	WP_020851241.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LZ756_RS12075 (LZ756_12075)	pilR	2507855..2509267 (-)	1413	WP_020851242.1	sigma-54 dependent transcriptional regulator	Regulator
LZ756_RS12080 (LZ756_12080)	-	2509453..2511063 (-)	1611	WP_020851243.1	ATP-binding protein	-
LZ756_RS12085 (LZ756_12085)	sucC	2511318..2512481 (+)	1164	WP_004090371.1	ADP-forming succinate--CoA ligase subunit beta	-
LZ756_RS12090 (LZ756_12090)	sucD	2512510..2513382 (+)	873	WP_004090370.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51287.19 Da
• Isoelectric Point: 7.4201

>NTDB_id=643409 LZ756_RS12075 WP_020851242.1 2507855..2509267(-) (pilR) [Xylella fastidiosa subsp. sandyi strain OC8]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLL
HLAAAIVARLAHTHGRAVPLLSPSALEALEHYSFPGNVRELENILERALALTEDNHIGAADLHLPQGSLHGQGLPLPLVP
TALPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=643409 LZ756_RS12075 WP_020851242.1 2507855..2509267(-) (pilR) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGATGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGCACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACTATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATTAATGTAATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCTG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCACACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGAACATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATAATCATATCGGTGCTGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGCTCTCCCGATTGTGCCTGTGGACGCATCAGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCTGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	57.996	99.787	0.579
pilR	Acinetobacter baumannii strain A118	47.579	100	0.481