Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LOD78_RS06235 Genome accession   NZ_CP090522
Coordinates   1224931..1226733 (-) Length   600 a.a.
NCBI ID   WP_274505114.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219931..1231733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS06210 (LOD78_06205) - 1221323..1221811 (-) 489 WP_171988745.1 LURP-one-related family protein -
  LOD78_RS06215 (LOD78_06210) prsA 1222079..1223065 (-) 987 WP_274505112.1 peptidylprolyl isomerase PrsA -
  LOD78_RS06220 (LOD78_06215) - 1223128..1223847 (-) 720 WP_216806635.1 O-methyltransferase -
  LOD78_RS06225 (LOD78_06220) - 1223922..1224470 (-) 549 WP_274505113.1 DUF6630 family protein -
  LOD78_RS06230 (LOD78_06225) - 1224483..1224929 (-) 447 WP_172035738.1 hypothetical protein -
  LOD78_RS06235 (LOD78_06230) pepF 1224931..1226733 (-) 1803 WP_274505114.1 oligoendopeptidase F Regulator
  LOD78_RS06240 (LOD78_06235) coiA 1226806..1227744 (-) 939 WP_274505115.1 competence protein CoiA family protein Machinery gene
  LOD78_RS06245 (LOD78_06240) metG 1227808..1229811 (-) 2004 WP_274505116.1 methionine--tRNA ligase -
  LOD78_RS06250 (LOD78_06245) - 1229966..1230559 (+) 594 WP_171988751.1 DUF1361 domain-containing protein -
  LOD78_RS06255 (LOD78_06250) - 1230603..1230986 (-) 384 WP_274505117.1 hypothetical protein -
  LOD78_RS06260 (LOD78_06255) - 1231614..1231727 (-) 114 WP_337999555.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69200.35 Da        Isoelectric Point: 4.5292

>NTDB_id=643185 LOD78_RS06235 WP_274505114.1 1224931..1226733(-) (pepF) [Streptococcus parasuis strain SS17]
MSKQRHEIEGKYQWDLTTIFPTDEAWEEELASLQAETETAKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSAFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNIKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAYENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGLHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=643185 LOD78_RS06235 WP_274505114.1 1224931..1226733(-) (pepF) [Streptococcus parasuis strain SS17]
ATGTCTAAACAACGTCATGAAATTGAAGGAAAATACCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACAGAAACGGCAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAAACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACTCGTGAAGGTAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGCCTTTTCACAGGCTTTTGC
CTTCTATGAACCTGAATTTATGGCTATTACTGAGGAACAGTTGAAAGCGTTCATGGATGAAGAGCCAACTTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCATGTTTTGTCACAAGAAATTGAAGAAGTATTGGCTGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACTTTCTCTGTTTTGGATAATGCAAGTATCCTATTCCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCTATGTACGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTCTGCAGTCAAACATTAAGGTCAAT
AACCTGAAAGCACGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCTCTTGCAGCCAATTTTATTCCAGAATCTGTTTA
TGATACATTAGTTGAGGCAGTCAACAAGCATCTCCCGCTCTTGCACCGTTATATCAATTTGCGAAAGAAACTCTTGGGTA
TTGATGACTTGAAGATGTACGATATGTACACGCCATTGTCAGATTTTAGCACCAAGATTTCCTATGAAGATGCACTCAAA
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAGGAAGCCTATGAGAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACAAACGCCTTCATGCTTCTCAACT
GGCAAGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGCAAGACA
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTAGCTGAAATTGCGTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTATTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTATACGGTCAGACTAACGAAAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTCGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTG
AACGTCATTGCAAAAGCTGGTGTAGATATGACCAAGGAAGACTATCTTAACGATGCTTTCAAAGTTTTTGAAGCACGCCT
AACTGAATTGGAAGAGCTTGTTGAAAAAGGGTTACATCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.5

100

0.695