Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   LOD78_RS05335 Genome accession   NZ_CP090522
Coordinates   1045705..1046931 (-) Length   408 a.a.
NCBI ID   WP_274505027.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040705..1051931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS05300 (LOD78_05295) - 1041116..1041688 (-) 573 WP_024392197.1 thymidine kinase -
  LOD78_RS05305 (LOD78_05300) - 1041806..1042033 (-) 228 WP_216658307.1 excalibur calcium-binding domain-containing protein -
  LOD78_RS05310 (LOD78_05305) - 1042023..1042328 (-) 306 WP_274505024.1 hypothetical protein -
  LOD78_RS05315 (LOD78_05310) - 1042460..1042642 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  LOD78_RS05320 (LOD78_05315) lepA 1042692..1044524 (-) 1833 WP_274505025.1 translation elongation factor 4 -
  LOD78_RS05325 (LOD78_05320) ndk 1044622..1045035 (-) 414 WP_239603928.1 nucleoside-diphosphate kinase -
  LOD78_RS05330 (LOD78_05325) yihA 1045057..1045644 (-) 588 WP_130555334.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LOD78_RS05335 (LOD78_05330) clpX 1045705..1046931 (-) 1227 WP_274505027.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  LOD78_RS05340 (LOD78_05335) - 1047129..1047641 (-) 513 WP_274505028.1 dihydrofolate reductase -
  LOD78_RS05345 (LOD78_05340) - 1047852..1048691 (-) 840 WP_171989800.1 thymidylate synthase -
  LOD78_RS05350 (LOD78_05345) - 1048744..1049046 (-) 303 WP_174845978.1 hypothetical protein -
  LOD78_RS05355 (LOD78_05350) - 1049059..1049337 (-) 279 WP_174845979.1 hypothetical protein -
  LOD78_RS05360 (LOD78_05355) - 1049462..1050421 (-) 960 WP_174845980.1 ROK family glucokinase -
  LOD78_RS05365 (LOD78_05360) - 1050584..1050919 (-) 336 WP_171989804.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45462.04 Da        Isoelectric Point: 4.5960

>NTDB_id=643181 LOD78_RS05335 WP_274505027.1 1045705..1046931(-) (clpX) [Streptococcus parasuis strain SS17]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDDNDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQVDTKN
ILFIVGGAFDGIEEIIKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVLAALNQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=643181 LOD78_RS05335 WP_274505027.1 1045705..1046931(-) (clpX) [Streptococcus parasuis strain SS17]
ATGGCTGTCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGCGATGATAATGATGTTGA
TTTGCAAAAATCTAACATCTTGATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAATATTTTA
CTTAAATTATTGCAGGCAGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGATGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCTAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCAAGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTATTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTGGCAGCCTTAAACCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGACTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

84.108

100

0.843
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.209

98.529

0.574