Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   LOD78_RS02525 Genome accession   NZ_CP090522
Coordinates   484444..485133 (+) Length   229 a.a.
NCBI ID   WP_239604567.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 479444..490133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS02500 (LOD78_02490) - 479774..481117 (+) 1344 WP_274505656.1 DEAD/DEAH box helicase -
  LOD78_RS02505 (LOD78_02495) - 481136..481360 (+) 225 WP_239604563.1 DUF4059 family protein -
  LOD78_RS02510 (LOD78_02500) trxB 481373..482290 (+) 918 WP_239604564.1 thioredoxin-disulfide reductase -
  LOD78_RS02515 (LOD78_02505) - 482300..482839 (+) 540 WP_239604565.1 YceD family protein -
  LOD78_RS02520 (LOD78_02510) gndA 482935..484362 (+) 1428 WP_239604566.1 NADP-dependent phosphogluconate dehydrogenase -
  LOD78_RS02525 (LOD78_02515) covR 484444..485133 (+) 690 WP_239604567.1 winged helix-turn-helix domain-containing protein Regulator
  LOD78_RS02530 (LOD78_02520) - 485213..486340 (+) 1128 WP_239604568.1 AI-2E family transporter -
  LOD78_RS02535 (LOD78_02525) - 486546..487793 (+) 1248 WP_239604569.1 aminoacyltransferase -
  LOD78_RS02540 (LOD78_02530) - 487771..488958 (+) 1188 WP_274505658.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  LOD78_RS02545 (LOD78_02535) nrdR 489032..489523 (+) 492 WP_024391135.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26264.16 Da        Isoelectric Point: 5.4091

>NTDB_id=643170 LOD78_RS02525 WP_239604567.1 484444..485133(+) (covR) [Streptococcus parasuis strain SS17]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGKEALSLAHETDFDLVLMSFQLSDMSSKELAKELLAIKPATVMIVV
VEPTEVADHGEDVLTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGFGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=643170 LOD78_RS02525 WP_239604567.1 484444..485133(+) (covR) [Streptococcus parasuis strain SS17]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAAAGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGGAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGACCATGGGGAAGATGTATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACAAATTGTAAACAAGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGCGACGTTGATGAATAGTCCGGAACCAGTTAGCCGAGAACAGCTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACCAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTTTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.085

100

0.493
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.373

100

0.437