Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   LOD78_RS01650 Genome accession   NZ_CP090522
Coordinates   322471..323763 (+) Length   430 a.a.
NCBI ID   WP_171989519.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317471..328763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS01625 (LOD78_01610) - 318139..318780 (+) 642 WP_105126053.1 response regulator transcription factor -
  LOD78_RS01630 (LOD78_01615) - 318832..320232 (+) 1401 WP_171989465.1 Cof-type HAD-IIB family hydrolase -
  LOD78_RS01635 (LOD78_01620) - 320234..320599 (+) 366 WP_024391839.1 S1 RNA-binding domain-containing protein -
  LOD78_RS01640 (LOD78_01625) cysK 320765..321691 (-) 927 WP_171989464.1 cysteine synthase A -
  LOD78_RS01645 (LOD78_01630) - 321782..322414 (-) 633 WP_174846440.1 YigZ family protein -
  LOD78_RS01650 (LOD78_01635) comFA/cflA 322471..323763 (+) 1293 WP_171989519.1 DEAD/DEAH box helicase Machinery gene
  LOD78_RS01655 (LOD78_01640) - 323756..324421 (+) 666 WP_274505593.1 ComF family protein -
  LOD78_RS01660 (LOD78_01645) raiA 324498..325037 (+) 540 WP_171989461.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48592.21 Da        Isoelectric Point: 9.3650

>NTDB_id=643168 LOD78_RS01650 WP_171989519.1 322471..323763(+) (comFA/cflA) [Streptococcus parasuis strain SS17]
MNELENYHGRLFTKYQLTSEERKKAKTISSVVGKNSCFRCGTSFEEENKLPNAAYYCRACLLLGRVRTDEKLYYFPQKDF
SMNACLLWKGALTDWQQRISDGLVANVEKRQATLVHAVTGAGKTEMMYHAVASLINKGGAVCLASPRIDVCIELYKRLQN
DFSVPISLLHGKSDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPILYRAADNAVKVDGVLVFLTATSTDEL
DKKVKSGKLQKLSLPRRFHGNPLVVPKKVWFSKFDTYLKKNKLVPKLRNAIQKQRETGYPLLIFVPEISKGLEFATIMEQ
IFPEETIGFVSSQTDNRLEIVEGFRNKEITILISTTILERGVTFPGVDVIVVQANHYLYTSSSLVQISGRVGRSMDRPTG
LLLFFHEGSTRSIEKAIAEIKQMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=643168 LOD78_RS01650 WP_171989519.1 322471..323763(+) (comFA/cflA) [Streptococcus parasuis strain SS17]
ATGAATGAACTAGAGAATTACCATGGAAGACTTTTTACTAAATACCAATTAACGTCAGAAGAAAGAAAAAAAGCAAAAAC
AATTTCCAGTGTAGTAGGAAAGAATTCTTGTTTCCGATGCGGTACATCGTTTGAGGAAGAAAACAAGCTGCCAAATGCTG
CGTATTATTGTCGGGCTTGTCTCCTTTTGGGGAGAGTTCGAACAGATGAGAAACTCTACTATTTTCCACAGAAAGATTTT
TCAATGAATGCTTGTCTTCTGTGGAAGGGGGCGCTGACCGATTGGCAACAACGAATATCAGATGGACTAGTTGCGAATGT
GGAAAAACGGCAAGCAACTCTTGTTCATGCTGTAACAGGTGCGGGCAAAACGGAAATGATGTACCATGCTGTTGCATCAC
TAATTAATAAAGGAGGTGCTGTATGTCTAGCCAGTCCAAGAATTGATGTTTGTATTGAACTCTACAAGCGACTACAAAAT
GATTTTTCGGTCCCAATTAGTCTGCTACATGGGAAATCAGACCCATATTTCAGAACGCCACTCGTTGTTGCGACCACTCA
TCAGTTGTTAAAGTTCTACCAGGCATTTGATTTGGTCTTGATCGATGAAGTAGATGCTTTCCCCTATGCAGACAACCCTA
TATTATATCGAGCAGCAGATAATGCAGTTAAAGTAGACGGTGTTTTAGTATTTTTAACAGCAACCTCTACGGATGAATTA
GATAAAAAAGTCAAATCAGGTAAATTGCAAAAACTCAGTCTCCCTAGACGTTTTCATGGAAATCCGCTTGTGGTTCCGAA
AAAGGTCTGGTTTTCCAAATTCGATACATATTTGAAGAAAAATAAATTAGTTCCAAAACTCAGAAATGCCATTCAAAAGC
AAAGAGAAACAGGCTATCCATTACTTATTTTTGTACCAGAAATTTCGAAAGGATTGGAATTTGCAACCATAATGGAACAA
ATCTTTCCAGAAGAAACAATTGGTTTTGTATCGAGTCAGACAGACAATCGGCTTGAAATAGTGGAAGGATTTCGCAACAA
AGAAATTACAATTTTAATTTCTACTACAATCTTAGAGCGTGGTGTAACATTCCCAGGAGTAGATGTCATTGTTGTTCAAG
CCAATCACTACTTATACACGTCATCGAGTCTCGTGCAAATTTCAGGTCGGGTCGGAAGAAGTATGGACCGTCCGACGGGC
TTACTTCTGTTTTTTCATGAAGGAAGTACGCGGTCAATTGAAAAGGCAATTGCAGAAATCAAACAAATGAATAAGGAGGC
AGGTTATGTCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(92-165)

Helicase conserved C-terminal domain (Helicase_C)

(288-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

65.258

99.07

0.647
  comFA/cflA Streptococcus pneumoniae D39

65.258

99.07

0.647
  comFA/cflA Streptococcus pneumoniae R6

65.258

99.07

0.647
  comFA/cflA Streptococcus pneumoniae TIGR4

65.258

99.07

0.647
  comFA/cflA Streptococcus mitis NCTC 12261

65.258

99.07

0.647
  comFA/cflA Streptococcus mitis SK321

65.023

99.07

0.644
  comFA Lactococcus lactis subsp. cremoris KW2

50.98

94.884

0.484
  comFA Latilactobacillus sakei subsp. sakei 23K

36.83

99.767

0.367