Detailed information NTG0643046

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: LZ758_RS11055
• Genome accession: NZ_CP090508
• Coordinates: 2370168..2371370 (-)
• Length: 400 a.a.
• NCBI ID: WP_010894959.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. morus strain Riv11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2365168..2376370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ758_RS11035 (LZ758_11035)	-	2366389..2367066 (+)	678	WP_010894955.1	response regulator transcription factor	-
LZ758_RS11040 (LZ758_11040)	-	2367059..2368396 (+)	1338	WP_004090387.1	HAMP domain-containing sensor histidine kinase	-
LZ758_RS11045 (LZ758_11045)	coaE	2368663..2369286 (-)	624	WP_020851236.1	dephospho-CoA kinase	-
LZ758_RS11050 (LZ758_11050)	-	2369298..2370161 (-)	864	WP_004084594.1	A24 family peptidase	-
LZ758_RS11055 (LZ758_11055)	pilC	2370168..2371370 (-)	1203	WP_010894959.1	type II secretion system F family protein	Machinery gene
LZ758_RS11060 (LZ758_11060)	-	2371811..2372257 (+)	447	WP_040123054.1	pilin	-
LZ758_RS11065 (LZ758_11065)	-	2372502..2372729 (-)	228	WP_012338102.1	hypothetical protein	-
LZ758_RS11070 (LZ758_11070)	-	2373562..2373996 (+)	435	WP_038228615.1	pilin	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44112.05 Da
• Isoelectric Point: 10.1299

>NTDB_id=643046 LZ758_RS11055 WP_010894959.1 2370168..2371370(-) (pilC) [Xylella fastidiosa subsp. morus strain Riv11]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=643046 LZ758_RS11055 WP_010894959.1 2370168..2371370(-) (pilC) [Xylella fastidiosa subsp. morus strain Riv11]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATTAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCTAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGTTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GCGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGATTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TCATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGCTGGATAGGTTGGTGTTGAAGTTCCCAGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTCTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.5	100	0.545
pilC	Legionella pneumophila strain ERS1305867	52.099	100	0.528
pilC	Acinetobacter baylyi ADP1	51	100	0.51
pilC	Acinetobacter baumannii D1279779	50.5	100	0.505
pilG	Neisseria gonorrhoeae MS11	43.467	99.5	0.432
pilG	Neisseria meningitidis 44/76-A	42.965	99.5	0.428
pilC	Vibrio cholerae strain A1552	40.943	100	0.413
pilC	Vibrio campbellii strain DS40M4	40.399	100	0.405
pilC	Thermus thermophilus HB27	37.352	100	0.395