Detailed information NTG0643031

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LZ757_RS11055
• Genome accession: NZ_CP090506
• Coordinates: 2371071..2372483 (-)
• Length: 470 a.a.
• NCBI ID: WP_020851962.1
• Uniprot ID: A0A9Q4QU34
• Organism: Xylella fastidiosa subsp. morus strain Riv19
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2366071..2377483

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ757_RS11035 (LZ757_11035)	-	2366219..2366665 (+)	447	WP_040123054.1	pilin	-
LZ757_RS11040 (LZ757_11040)	-	2366910..2367137 (-)	228	WP_012338102.1	hypothetical protein	-
LZ757_RS11045 (LZ757_11045)	-	2367970..2368404 (+)	435	WP_038228615.1	pilin	-
LZ757_RS11050 (LZ757_11050)	pilB	2369244..2370977 (+)	1734	WP_012338105.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LZ757_RS11055 (LZ757_11055)	pilR	2371071..2372483 (-)	1413	WP_020851962.1	sigma-54 dependent transcriptional regulator	Regulator
LZ757_RS11060 (LZ757_11060)	-	2372670..2374280 (-)	1611	WP_038228612.1	ATP-binding protein	-
LZ757_RS11065 (LZ757_11065)	sucC	2374535..2375698 (+)	1164	WP_004090371.1	ADP-forming succinate--CoA ligase subunit beta	-
LZ757_RS11070 (LZ757_11070)	sucD	2375727..2376599 (+)	873	WP_038228610.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51368.35 Da
• Isoelectric Point: 7.2158

>NTDB_id=643031 LZ757_RS11055 WP_020851962.1 2371071..2372483(-) (pilR) [Xylella fastidiosa subsp. morus strain Riv19]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERVGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASALVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=643031 LZ757_RS11055 WP_020851962.1 2371071..2372483(-) (pilR) [Xylella fastidiosa subsp. morus strain Riv19]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGTTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCTCACACGCATGGGCGGGCGGTTCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTTCCGATTGTGCCTGTGGACGCATCGGCATTGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAAAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTGCGTTACAAACTAAAGAAGCTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.635	99.787	0.585
pilR	Acinetobacter baumannii strain A118	46.822	100	0.47