Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHC87_RS01520 Genome accession   NZ_CP090501
Coordinates   304099..304647 (+) Length   182 a.a.
NCBI ID   WP_044174221.1    Uniprot ID   A0A1Q9H2L1
Organism   Photobacterium damselae subsp. damselae strain CSP DAM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 299099..309647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC87_RS01510 (IHC87_01510) - 299103..300854 (-) 1752 WP_237033326.1 PglL family O-oligosaccharyltransferase -
  IHC87_RS01515 (IHC87_01515) uvrA 301007..303832 (-) 2826 WP_237033327.1 excinuclease ABC subunit UvrA -
  IHC87_RS01520 (IHC87_01520) ssb 304099..304647 (+) 549 WP_044174221.1 single-stranded DNA-binding protein Machinery gene
  IHC87_RS01525 (IHC87_01525) csrD 304798..306738 (+) 1941 WP_065170866.1 RNase E specificity factor CsrD -
  IHC87_RS01530 (IHC87_01530) - 306903..308354 (+) 1452 WP_237033328.1 PilN domain-containing protein -
  IHC87_RS01535 (IHC87_01535) pilO 308351..308986 (+) 636 WP_065170864.1 type 4a pilus biogenesis protein PilO -
  IHC87_RS01540 (IHC87_01540) - 308979..309302 (+) 324 WP_065170863.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20101.25 Da        Isoelectric Point: 4.9059

>NTDB_id=642966 IHC87_RS01520 WP_044174221.1 304099..304647(+) (ssb) [Photobacterium damselae subsp. damselae strain CSP DAM1]
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGAPMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPA
QQPAPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=642966 IHC87_RS01520 WP_044174221.1 304099..304647(+) (ssb) [Photobacterium damselae subsp. damselae strain CSP DAM1]
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACTATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCCGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAAATCGTAGTACAAGGCTT
TAACGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGCTCCTATGGGCGGTCAACAGC
AGCAAGGCGGTTGGGGTCAACCACAACAGCCTGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCT
CAACAACCTGCACCTCAGCAGCAGTACAATGAGCCACCAATGGACTTCGACGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9H2L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.473

100

0.775
  ssb Glaesserella parasuis strain SC1401

57.527

100

0.588
  ssb Neisseria meningitidis MC58

46.739

100

0.473
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.473