Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   IHC88_RS02060 Genome accession   NZ_CP090498
Coordinates   421923..422519 (-) Length   198 a.a.
NCBI ID   WP_065171760.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain CSP DAM2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416923..427519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC88_RS02045 (IHC88_02045) - 418015..419028 (+) 1014 WP_065171762.1 Fe(3+) ABC transporter substrate-binding protein -
  IHC88_RS02050 (IHC88_02050) - 419185..420810 (+) 1626 WP_237033357.1 ABC transporter permease -
  IHC88_RS02055 (IHC88_02055) - 420813..421850 (+) 1038 WP_237033754.1 ABC transporter ATP-binding protein -
  IHC88_RS02060 (IHC88_02060) hapR 421923..422519 (-) 597 WP_065171760.1 TetR/AcrR family transcriptional regulator Regulator
  IHC88_RS02065 (IHC88_02065) hpt 422740..423276 (+) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  IHC88_RS02070 (IHC88_02070) can 423351..424022 (-) 672 WP_005297646.1 carbonate dehydratase -
  IHC88_RS02075 (IHC88_02075) - 424121..425044 (+) 924 WP_237033358.1 ABC transporter ATP-binding protein -
  IHC88_RS02080 (IHC88_02080) - 425041..425811 (+) 771 WP_065171758.1 ABC transporter permease -
  IHC88_RS02085 (IHC88_02085) panC 425929..426819 (-) 891 WP_005297652.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22748.02 Da        Isoelectric Point: 7.1177

>NTDB_id=642935 IHC88_RS02060 WP_065171760.1 421923..422519(-) (hapR) [Photobacterium damselae subsp. damselae strain CSP DAM2]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEIANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKGNLQKLTAVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADNYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=642935 IHC88_RS02060 WP_065171760.1 421923..422519(-) (hapR) [Photobacterium damselae subsp. damselae strain CSP DAM2]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGTGCACTGGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGAGGTCACGCAGATATCGCGGAAATAGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACCGCAAAAGCAAAACTGACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCGCTATTTATCAAAACCA
ATAAAGGTAACTTACAAAAGTTAACCGCGGTTTTTGAACAGGGATTAACAGCTGGAGAATTTAGTCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACTCACCTAACCTTAGACCCTGAAATTAT
GCAGCGACAAGCTGATAACTATTTACAGAGCCTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485
  opaR Vibrio parahaemolyticus RIMD 2210633

52.514

90.404

0.475