Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   NDN54_RS05515 Genome accession   NZ_CP107266
Coordinates   1035730..1036974 (-) Length   414 a.a.
NCBI ID   WP_010357951.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9112     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030730..1041974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS05480 (NDN54_05480) - 1030933..1032321 (+) 1389 WP_003688859.1 DEAD/DEAH box helicase -
  NDN54_RS05490 (NDN54_05490) - 1032672..1032872 (-) 201 WP_003688861.1 hypothetical protein -
  NDN54_RS05495 (NDN54_05495) - 1032886..1033440 (-) 555 WP_003688863.1 hypothetical protein -
  NDN54_RS05500 (NDN54_05500) - 1033525..1034025 (-) 501 WP_010357954.1 hypothetical protein -
  NDN54_RS05505 (NDN54_05505) - 1034122..1034331 (+) 210 WP_003702791.1 hypothetical protein -
  NDN54_RS05510 (NDN54_05510) - 1034430..1035623 (+) 1194 WP_003691287.1 aspartate aminotransferase family protein -
  NDN54_RS05515 (NDN54_05515) clpX 1035730..1036974 (-) 1245 WP_010357951.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NDN54_RS05520 (NDN54_05520) rbfA 1037157..1037528 (+) 372 WP_003692998.1 30S ribosome-binding factor RbfA -
  NDN54_RS05525 (NDN54_05525) - 1037539..1038063 (+) 525 WP_003688872.1 hypothetical protein -
  NDN54_RS05530 (NDN54_05530) truB 1038121..1039041 (+) 921 WP_003701393.1 tRNA pseudouridine(55) synthase TruB -
  NDN54_RS05535 (NDN54_05535) - 1039259..1041469 (+) 2211 WP_050169480.1 DNA methyltransferase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44804.21 Da        Isoelectric Point: 4.9875

>NTDB_id=642895 NDN54_RS05515 WP_010357951.1 1035730..1036974(-) (clpX) [Neisseria gonorrhoeae strain 9112]
MSNENRTCSFCGKSKSHAKHLIEGKNAYICDECVANCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVEKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=642895 NDN54_RS05515 WP_010357951.1 1035730..1036974(-) (clpX) [Neisseria gonorrhoeae strain 9112]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGCCAAACACCTGATTGAGGGCAAAAACGC
CTATATCTGCGACGAATGCGTCGCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCGAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCGGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.797

100

0.558
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.964

99.758

0.548