Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDN54_RS02680 Genome accession   NZ_CP107266
Coordinates   520461..521072 (+) Length   203 a.a.
NCBI ID   WP_012503481.1    Uniprot ID   B4RKG6
Organism   Neisseria gonorrhoeae strain 9112     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515461..526072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS02655 (NDN54_02655) - 515801..516382 (-) 582 WP_003690895.1 superoxide dismutase -
  NDN54_RS02660 (NDN54_02660) dnaB 516546..517949 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDN54_RS12060 - 517943..518055 (-) 113 Protein_517 IS5/IS1182 family transposase -
  NDN54_RS02665 (NDN54_02665) pilH 518206..518880 (+) 675 WP_260239863.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDN54_RS02670 (NDN54_02670) pilV/pilI 518912..519526 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  NDN54_RS02675 (NDN54_02675) pilJ 519523..520482 (+) 960 WP_012503480.1 PilW family protein Machinery gene
  NDN54_RS02680 (NDN54_02680) pilK 520461..521072 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDN54_RS02685 (NDN54_02685) pilL 521074..521547 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDN54_RS02690 (NDN54_02690) - 521617..521925 (-) 309 WP_003706588.1 AzlD family protein -
  NDN54_RS02695 (NDN54_02695) - 521922..522633 (-) 712 Protein_524 AzlC family ABC transporter permease -
  NDN54_RS02700 (NDN54_02700) dut 522799..523251 (+) 453 WP_003701071.1 dUTP diphosphatase -
  NDN54_RS02705 (NDN54_02705) dapC 523323..524510 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  NDN54_RS02710 (NDN54_02710) yaaA 524666..525445 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22021.91 Da        Isoelectric Point: 8.0862

>NTDB_id=642879 NDN54_RS02680 WP_012503481.1 520461..521072(+) (pilK) [Neisseria gonorrhoeae strain 9112]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=642879 NDN54_RS02680 WP_012503481.1 520461..521072(+) (pilK) [Neisseria gonorrhoeae strain 9112]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

96.059

100

0.961